miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16297 3' -54.6 NC_004084.1 + 35978 0.97 0.010534
Target:  5'- cCCGACUCGAUCAGCUcgUCUCCGACCg -3'
miRNA:   3'- -GGCUGAGCUAGUCGAcgAGAGGCUGG- -5'
16297 3' -54.6 NC_004084.1 + 53672 0.79 0.169154
Target:  5'- cCCGAuCUCGAUCAGCUGCucagUCUCCaaaucGGCUu -3'
miRNA:   3'- -GGCU-GAGCUAGUCGACG----AGAGG-----CUGG- -5'
16297 3' -54.6 NC_004084.1 + 7235 0.75 0.306005
Target:  5'- gCCGACcucgaCGAUCGGCgcgUGCUCggCGACCg -3'
miRNA:   3'- -GGCUGa----GCUAGUCG---ACGAGagGCUGG- -5'
16297 3' -54.6 NC_004084.1 + 53729 0.75 0.328287
Target:  5'- gUCGGCUCGGUCcucgacgAGCUGCUCuaucuggucUCCGAUUc -3'
miRNA:   3'- -GGCUGAGCUAG-------UCGACGAG---------AGGCUGG- -5'
16297 3' -54.6 NC_004084.1 + 3623 0.74 0.370322
Target:  5'- aCCGACUacgaggCGAUCGGCUGg-CUCaCGAUCg -3'
miRNA:   3'- -GGCUGA------GCUAGUCGACgaGAG-GCUGG- -5'
16297 3' -54.6 NC_004084.1 + 23483 0.73 0.394914
Target:  5'- -gGACUCGAUCAGCgagucguccacaGCUauggaUCCGAUCa -3'
miRNA:   3'- ggCUGAGCUAGUCGa-----------CGAg----AGGCUGG- -5'
16297 3' -54.6 NC_004084.1 + 13588 0.73 0.405772
Target:  5'- uCCGAcCUCGGUCAGCUcGauaccgUCaCCGACCg -3'
miRNA:   3'- -GGCU-GAGCUAGUCGA-Cg-----AGaGGCUGG- -5'
16297 3' -54.6 NC_004084.1 + 36820 0.72 0.43372
Target:  5'- cCCGAgaCGGUcCAGCUGCUCgCCGGu- -3'
miRNA:   3'- -GGCUgaGCUA-GUCGACGAGaGGCUgg -5'
16297 3' -54.6 NC_004084.1 + 7927 0.72 0.43372
Target:  5'- gUCGAucucCUCGGUCAGUUGCUCgUgCGGCg -3'
miRNA:   3'- -GGCU----GAGCUAGUCGACGAG-AgGCUGg -5'
16297 3' -54.6 NC_004084.1 + 56870 0.72 0.443282
Target:  5'- uCCGGCUCGA-CGGCcgUGcCUCgguccagaCCGACCg -3'
miRNA:   3'- -GGCUGAGCUaGUCG--AC-GAGa-------GGCUGG- -5'
16297 3' -54.6 NC_004084.1 + 57884 0.71 0.491763
Target:  5'- gUCGACUCGAacCGGCgggcgaaccGCUCaucgaagUCCGACCg -3'
miRNA:   3'- -GGCUGAGCUa-GUCGa--------CGAG-------AGGCUGG- -5'
16297 3' -54.6 NC_004084.1 + 27303 0.71 0.492778
Target:  5'- gCGGCUCGAcgAGCUGauaUUCGACCg -3'
miRNA:   3'- gGCUGAGCUagUCGACgagAGGCUGG- -5'
16297 3' -54.6 NC_004084.1 + 40585 0.71 0.513283
Target:  5'- gCCGuCUCGAgcUCGGCU--UCUCgGACCu -3'
miRNA:   3'- -GGCuGAGCU--AGUCGAcgAGAGgCUGG- -5'
16297 3' -54.6 NC_004084.1 + 2724 0.71 0.534128
Target:  5'- gUGACUCGAcUCAGUgaacGUUgUCCGACUc -3'
miRNA:   3'- gGCUGAGCU-AGUCGa---CGAgAGGCUGG- -5'
16297 3' -54.6 NC_004084.1 + 26539 0.7 0.576641
Target:  5'- uCCGAUUC--UCAuGUaGCUCUCUGGCCu -3'
miRNA:   3'- -GGCUGAGcuAGU-CGaCGAGAGGCUGG- -5'
16297 3' -54.6 NC_004084.1 + 33962 0.7 0.5874
Target:  5'- uCCGAUUCGucCAGCUGCUaUUCCcGCUa -3'
miRNA:   3'- -GGCUGAGCuaGUCGACGA-GAGGcUGG- -5'
16297 3' -54.6 NC_004084.1 + 10753 0.69 0.598195
Target:  5'- uCCGGCUCGc-CAGUggggGCgUCgCCGACCu -3'
miRNA:   3'- -GGCUGAGCuaGUCGa---CG-AGaGGCUGG- -5'
16297 3' -54.6 NC_004084.1 + 1199 0.69 0.609017
Target:  5'- aCGGCUCGAUCcugaacgcuGGCUgGCUCggCGGCg -3'
miRNA:   3'- gGCUGAGCUAG---------UCGA-CGAGagGCUGg -5'
16297 3' -54.6 NC_004084.1 + 23211 0.69 0.630712
Target:  5'- gUCGGCUCGAUCccgacgauucggAGgaGCUCgagCGGCCc -3'
miRNA:   3'- -GGCUGAGCUAG------------UCgaCGAGag-GCUGG- -5'
16297 3' -54.6 NC_004084.1 + 52924 0.69 0.652412
Target:  5'- aCGACUCG-UCGaCUGCgacgaUCUGGCCg -3'
miRNA:   3'- gGCUGAGCuAGUcGACGag---AGGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.