miRNA display CGI


Results 1 - 20 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16297 3' -54.6 NC_004084.1 + 1199 0.69 0.609017
Target:  5'- aCGGCUCGAUCcugaacgcuGGCUgGCUCggCGGCg -3'
miRNA:   3'- gGCUGAGCUAG---------UCGA-CGAGagGCUGg -5'
16297 3' -54.6 NC_004084.1 + 2724 0.71 0.534128
Target:  5'- gUGACUCGAcUCAGUgaacGUUgUCCGACUc -3'
miRNA:   3'- gGCUGAGCU-AGUCGa---CGAgAGGCUGG- -5'
16297 3' -54.6 NC_004084.1 + 3623 0.74 0.370322
Target:  5'- aCCGACUacgaggCGAUCGGCUGg-CUCaCGAUCg -3'
miRNA:   3'- -GGCUGA------GCUAGUCGACgaGAG-GCUGG- -5'
16297 3' -54.6 NC_004084.1 + 5214 0.68 0.695511
Target:  5'- gCGACUCGA-CGuGCUGCUUccagUCgCGACg -3'
miRNA:   3'- gGCUGAGCUaGU-CGACGAG----AG-GCUGg -5'
16297 3' -54.6 NC_004084.1 + 5404 0.67 0.768213
Target:  5'- uCCG-CUCGAUcCAGUaGgUCUCgUGGCCg -3'
miRNA:   3'- -GGCuGAGCUA-GUCGaCgAGAG-GCUGG- -5'
16297 3' -54.6 NC_004084.1 + 6392 0.68 0.674038
Target:  5'- aCCG-CUCGcUCAGcCUGCUCgagGGCCu -3'
miRNA:   3'- -GGCuGAGCuAGUC-GACGAGaggCUGG- -5'
16297 3' -54.6 NC_004084.1 + 7235 0.75 0.306005
Target:  5'- gCCGACcucgaCGAUCGGCgcgUGCUCggCGACCg -3'
miRNA:   3'- -GGCUGa----GCUAGUCG---ACGAGagGCUGG- -5'
16297 3' -54.6 NC_004084.1 + 7927 0.72 0.43372
Target:  5'- gUCGAucucCUCGGUCAGUUGCUCgUgCGGCg -3'
miRNA:   3'- -GGCU----GAGCUAGUCGACGAG-AgGCUGg -5'
16297 3' -54.6 NC_004084.1 + 8863 0.66 0.81628
Target:  5'- aCCG-CUCGAucUCAGCU-UUCgacacgCCGAUCa -3'
miRNA:   3'- -GGCuGAGCU--AGUCGAcGAGa-----GGCUGG- -5'
16297 3' -54.6 NC_004084.1 + 10753 0.69 0.598195
Target:  5'- uCCGGCUCGc-CAGUggggGCgUCgCCGACCu -3'
miRNA:   3'- -GGCUGAGCuaGUCGa---CG-AGaGGCUGG- -5'
16297 3' -54.6 NC_004084.1 + 12663 0.68 0.674038
Target:  5'- aUCGGCguccCGAUCgAGCggacugGUUCguagCCGACCa -3'
miRNA:   3'- -GGCUGa---GCUAG-UCGa-----CGAGa---GGCUGG- -5'
16297 3' -54.6 NC_004084.1 + 13411 0.67 0.768213
Target:  5'- gCGACUCGAUC-GUUGCg--CCGgaGCUa -3'
miRNA:   3'- gGCUGAGCUAGuCGACGagaGGC--UGG- -5'
16297 3' -54.6 NC_004084.1 + 13588 0.73 0.405772
Target:  5'- uCCGAcCUCGGUCAGCUcGauaccgUCaCCGACCg -3'
miRNA:   3'- -GGCU-GAGCUAGUCGA-Cg-----AGaGGCUGG- -5'
16297 3' -54.6 NC_004084.1 + 16547 0.66 0.787923
Target:  5'- uUGGCUC--UCAacGCgGCUCUCgGGCCg -3'
miRNA:   3'- gGCUGAGcuAGU--CGaCGAGAGgCUGG- -5'
16297 3' -54.6 NC_004084.1 + 19091 0.67 0.758148
Target:  5'- gUCGACgUCGAUCAGCaccgcgGCggCUaCCGugUg -3'
miRNA:   3'- -GGCUG-AGCUAGUCGa-----CGa-GA-GGCugG- -5'
16297 3' -54.6 NC_004084.1 + 22183 0.67 0.716745
Target:  5'- gUCGACcCGGUaGGCgaGUUCUCCGAgCa -3'
miRNA:   3'- -GGCUGaGCUAgUCGa-CGAGAGGCUgG- -5'
16297 3' -54.6 NC_004084.1 + 23117 0.67 0.767212
Target:  5'- gCCGACgaaCG-UCAGCagGCUCUcgcgcugacuucgCCGACUc -3'
miRNA:   3'- -GGCUGa--GCuAGUCGa-CGAGA-------------GGCUGG- -5'
16297 3' -54.6 NC_004084.1 + 23211 0.69 0.630712
Target:  5'- gUCGGCUCGAUCccgacgauucggAGgaGCUCgagCGGCCc -3'
miRNA:   3'- -GGCUGAGCUAG------------UCgaCGAGag-GCUGG- -5'
16297 3' -54.6 NC_004084.1 + 23483 0.73 0.394914
Target:  5'- -gGACUCGAUCAGCgagucguccacaGCUauggaUCCGAUCa -3'
miRNA:   3'- ggCUGAGCUAGUCGa-----------CGAg----AGGCUGG- -5'
16297 3' -54.6 NC_004084.1 + 26033 0.67 0.737653
Target:  5'- gCgGACUCGAUCgagcggAGCUGCUUgaagagaagCuCGAUCg -3'
miRNA:   3'- -GgCUGAGCUAG------UCGACGAGa--------G-GCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.