miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16297 3' -54.6 NC_004084.1 + 26539 0.7 0.576641
Target:  5'- uCCGAUUC--UCAuGUaGCUCUCUGGCCu -3'
miRNA:   3'- -GGCUGAGcuAGU-CGaCGAGAGGCUGG- -5'
16297 3' -54.6 NC_004084.1 + 27303 0.71 0.492778
Target:  5'- gCGGCUCGAcgAGCUGauaUUCGACCg -3'
miRNA:   3'- gGCUGAGCUagUCGACgagAGGCUGG- -5'
16297 3' -54.6 NC_004084.1 + 29784 0.68 0.684799
Target:  5'- gCGACg-GGUCGGCguacacCUaCUCCGGCCg -3'
miRNA:   3'- gGCUGagCUAGUCGac----GA-GAGGCUGG- -5'
16297 3' -54.6 NC_004084.1 + 32988 0.66 0.797547
Target:  5'- cCCGGCagUGAUUcaAGCUGCcCUCgaggaGACCa -3'
miRNA:   3'- -GGCUGa-GCUAG--UCGACGaGAGg----CUGG- -5'
16297 3' -54.6 NC_004084.1 + 33962 0.7 0.5874
Target:  5'- uCCGAUUCGucCAGCUGCUaUUCCcGCUa -3'
miRNA:   3'- -GGCUGAGCuaGUCGACGA-GAGGcUGG- -5'
16297 3' -54.6 NC_004084.1 + 35140 0.67 0.747958
Target:  5'- -gGACU-GGUCGGCcGCUCggucUCCaGACCg -3'
miRNA:   3'- ggCUGAgCUAGUCGaCGAG----AGG-CUGG- -5'
16297 3' -54.6 NC_004084.1 + 35978 0.97 0.010534
Target:  5'- cCCGACUCGAUCAGCUcgUCUCCGACCg -3'
miRNA:   3'- -GGCUGAGCUAGUCGAcgAGAGGCUGG- -5'
16297 3' -54.6 NC_004084.1 + 36820 0.72 0.43372
Target:  5'- cCCGAgaCGGUcCAGCUGCUCgCCGGu- -3'
miRNA:   3'- -GGCUgaGCUA-GUCGACGAGaGGCUgg -5'
16297 3' -54.6 NC_004084.1 + 40347 0.66 0.805126
Target:  5'- cUCGAUgUUGAUCGGCcguuugucacggGCUCUCCGuuCg -3'
miRNA:   3'- -GGCUG-AGCUAGUCGa-----------CGAGAGGCugG- -5'
16297 3' -54.6 NC_004084.1 + 40585 0.71 0.513283
Target:  5'- gCCGuCUCGAgcUCGGCU--UCUCgGACCu -3'
miRNA:   3'- -GGCuGAGCU--AGUCGAcgAGAGgCUGG- -5'
16297 3' -54.6 NC_004084.1 + 41816 0.68 0.684799
Target:  5'- -aGAC-CGAUCAGCgcagcagucGCcgCUCCGACg -3'
miRNA:   3'- ggCUGaGCUAGUCGa--------CGa-GAGGCUGg -5'
16297 3' -54.6 NC_004084.1 + 42732 0.68 0.663239
Target:  5'- gCGAgUUGAUCGGCUGCgagcgccacguUCUCCauuuCCu -3'
miRNA:   3'- gGCUgAGCUAGUCGACG-----------AGAGGcu--GG- -5'
16297 3' -54.6 NC_004084.1 + 45486 0.67 0.727245
Target:  5'- uUCGGCgUCGAUCAGCg--UCUacCUGGCCg -3'
miRNA:   3'- -GGCUG-AGCUAGUCGacgAGA--GGCUGG- -5'
16297 3' -54.6 NC_004084.1 + 47422 0.66 0.797547
Target:  5'- gUCGGCUCcucGUCAGCcGCaUCUCCu-CCa -3'
miRNA:   3'- -GGCUGAGc--UAGUCGaCG-AGAGGcuGG- -5'
16297 3' -54.6 NC_004084.1 + 52773 0.68 0.6805
Target:  5'- gCgGACuUCGAcgagaaccaggagCGGCUGCUUcaggagguUCCGACCg -3'
miRNA:   3'- -GgCUG-AGCUa------------GUCGACGAG--------AGGCUGG- -5'
16297 3' -54.6 NC_004084.1 + 52924 0.69 0.652412
Target:  5'- aCGACUCG-UCGaCUGCgacgaUCUGGCCg -3'
miRNA:   3'- gGCUGAGCuAGUcGACGag---AGGCUGG- -5'
16297 3' -54.6 NC_004084.1 + 53256 0.68 0.706163
Target:  5'- aUCGACUCGAgu-GCUGC-CUCaggGACg -3'
miRNA:   3'- -GGCUGAGCUaguCGACGaGAGg--CUGg -5'
16297 3' -54.6 NC_004084.1 + 53672 0.79 0.169154
Target:  5'- cCCGAuCUCGAUCAGCUGCucagUCUCCaaaucGGCUu -3'
miRNA:   3'- -GGCU-GAGCUAGUCGACG----AGAGG-----CUGG- -5'
16297 3' -54.6 NC_004084.1 + 53729 0.75 0.328287
Target:  5'- gUCGGCUCGGUCcucgacgAGCUGCUCuaucuggucUCCGAUUc -3'
miRNA:   3'- -GGCUGAGCUAG-------UCGACGAG---------AGGCUGG- -5'
16297 3' -54.6 NC_004084.1 + 54208 0.66 0.81628
Target:  5'- uCCGAC-CG-UCAGCgGCUCgagUCgGAUCu -3'
miRNA:   3'- -GGCUGaGCuAGUCGaCGAG---AGgCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.