Results 41 - 47 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16298 | 3' | -55.2 | NC_004084.1 | + | 5236 | 0.7 | 0.537088 |
Target: 5'- gUCGCGACgGACgaacacgcugGGGUCAgucaUCGgccUCGUCGa -3' miRNA: 3'- -AGUGCUGgCUG----------CCCAGU----AGC---AGCAGC- -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 52944 | 0.7 | 0.537088 |
Target: 5'- aUCugG-CCGuCGGcGUCGUCGugaUCGUCGc -3' miRNA: 3'- -AGugCuGGCuGCC-CAGUAGC---AGCAGC- -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 14264 | 0.71 | 0.516457 |
Target: 5'- cCGgGACCagGugGaGGUCcUCGUCGUCGc -3' miRNA: 3'- aGUgCUGG--CugC-CCAGuAGCAGCAGC- -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 29066 | 0.74 | 0.32569 |
Target: 5'- cCGCGACCGcccgcuCGGGggCGUCGUCGcCGc -3' miRNA: 3'- aGUGCUGGCu-----GCCCa-GUAGCAGCaGC- -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 215 | 0.75 | 0.310478 |
Target: 5'- gCACGGCCaucGGCGGGggaGUCGUCGUUc -3' miRNA: 3'- aGUGCUGG---CUGCCCag-UAGCAGCAGc -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 14078 | 0.76 | 0.274836 |
Target: 5'- cCGCGACCGACGuagacGUCGaUGUCGUCGu -3' miRNA: 3'- aGUGCUGGCUGCc----CAGUaGCAGCAGC- -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 35404 | 1.1 | 0.001303 |
Target: 5'- aUCACGACCGACGGGUCAUCGUCGUCGa -3' miRNA: 3'- -AGUGCUGGCUGCCCAGUAGCAGCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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