miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16298 3' -55.2 NC_004084.1 + 19646 0.68 0.664658
Target:  5'- -aGCGcCCGAa-GGUCGUCGUgCGUCa -3'
miRNA:   3'- agUGCuGGCUgcCCAGUAGCA-GCAGc -5'
16298 3' -55.2 NC_004084.1 + 1171 0.68 0.65397
Target:  5'- uUCGCGucaucGCCGACGcGGUCGUggaCGUaGUCGc -3'
miRNA:   3'- -AGUGC-----UGGCUGC-CCAGUA---GCAgCAGC- -5'
16298 3' -55.2 NC_004084.1 + 48991 0.69 0.632545
Target:  5'- gUCGCGGCCcaucGCGcGGUCcgUGUCGaUCGu -3'
miRNA:   3'- -AGUGCUGGc---UGC-CCAGuaGCAGC-AGC- -5'
16298 3' -55.2 NC_004084.1 + 811 0.69 0.621827
Target:  5'- -gGCGAUCGugGaGGUCcUCGUCGa-- -3'
miRNA:   3'- agUGCUGGCugC-CCAGuAGCAGCagc -5'
16298 3' -55.2 NC_004084.1 + 46270 0.7 0.575946
Target:  5'- -uGCGACauccaucgcuucguCGACGGaGUCGUaGUCGUCGa -3'
miRNA:   3'- agUGCUG--------------GCUGCC-CAGUAgCAGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 54120 0.7 0.557996
Target:  5'- cCGCGAucaCCGGCGGGaCGUCGUggacuuugaggaUGUCGu -3'
miRNA:   3'- aGUGCU---GGCUGCCCaGUAGCA------------GCAGC- -5'
16298 3' -55.2 NC_004084.1 + 3019 0.7 0.551697
Target:  5'- aUCAUG-CCGAguaugucggcgauacCGGGaucaaUCAUCGUCGUCa -3'
miRNA:   3'- -AGUGCuGGCU---------------GCCC-----AGUAGCAGCAGc -5'
16298 3' -55.2 NC_004084.1 + 50132 0.68 0.696511
Target:  5'- cCGCGAUCguccggauGACGaGGUCGUUGUCGagGa -3'
miRNA:   3'- aGUGCUGG--------CUGC-CCAGUAGCAGCagC- -5'
16298 3' -55.2 NC_004084.1 + 45852 0.68 0.696511
Target:  5'- aUCGCuugcCCGucuucggugaACGGGaCGUCGUCGUCGc -3'
miRNA:   3'- -AGUGcu--GGC----------UGCCCaGUAGCAGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 50991 0.66 0.787738
Target:  5'- cUCGCcACCGuCGGcaUCGcccUCGUCGUCGa -3'
miRNA:   3'- -AGUGcUGGCuGCCc-AGU---AGCAGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 13123 0.66 0.787738
Target:  5'- cCugGAgUuGCGGGcCGUCGUCGUa- -3'
miRNA:   3'- aGugCUgGcUGCCCaGUAGCAGCAgc -5'
16298 3' -55.2 NC_004084.1 + 12742 0.66 0.787738
Target:  5'- gCACGaucucgucgacGCCGAcCGucUCGUCGUUGUCGg -3'
miRNA:   3'- aGUGC-----------UGGCU-GCccAGUAGCAGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 26478 0.66 0.778077
Target:  5'- gCGCG-CCGGCGacguugaguguGGUCGUCGUCuUCc -3'
miRNA:   3'- aGUGCuGGCUGC-----------CCAGUAGCAGcAGc -5'
16298 3' -55.2 NC_004084.1 + 16099 0.66 0.768273
Target:  5'- aUCuCGucCCGAC-GGUCGUCGcgaUCGUCGc -3'
miRNA:   3'- -AGuGCu-GGCUGcCCAGUAGC---AGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 6545 0.66 0.768273
Target:  5'- aUCuCGACCGGCGuccGGUaguUCGacUCGUCGa -3'
miRNA:   3'- -AGuGCUGGCUGC---CCAgu-AGC--AGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 3348 0.66 0.768273
Target:  5'- -aACcGCCGAUuGGUCGUCGacgugCGUCGa -3'
miRNA:   3'- agUGcUGGCUGcCCAGUAGCa----GCAGC- -5'
16298 3' -55.2 NC_004084.1 + 58106 0.67 0.748276
Target:  5'- cCGCGcCCcugcuuCGGGUUcucgucggcgGUCGUCGUCGa -3'
miRNA:   3'- aGUGCuGGcu----GCCCAG----------UAGCAGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 17328 0.67 0.738104
Target:  5'- cCGCGG-CGACGGcccgCAUCGucUCGUCGa -3'
miRNA:   3'- aGUGCUgGCUGCCca--GUAGC--AGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 49665 0.67 0.727831
Target:  5'- aC-CGGCUGAagcCGGGUgGUCcGUCGUCu -3'
miRNA:   3'- aGuGCUGGCU---GCCCAgUAG-CAGCAGc -5'
16298 3' -55.2 NC_004084.1 + 18696 0.67 0.707024
Target:  5'- gUCAuccuCG-UCGACGGcGUCGUCGcCGUCa -3'
miRNA:   3'- -AGU----GCuGGCUGCC-CAGUAGCaGCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.