miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16298 3' -55.2 NC_004084.1 + 29066 0.74 0.32569
Target:  5'- cCGCGACCGcccgcuCGGGggCGUCGUCGcCGc -3'
miRNA:   3'- aGUGCUGGCu-----GCCCa-GUAGCAGCaGC- -5'
16298 3' -55.2 NC_004084.1 + 28654 0.66 0.806589
Target:  5'- gUCGCGAUgcagGAC-GGUCAUCGUC-UCGc -3'
miRNA:   3'- -AGUGCUGg---CUGcCCAGUAGCAGcAGC- -5'
16298 3' -55.2 NC_004084.1 + 2427 0.66 0.806589
Target:  5'- aCGCGAUCGugGGcGgugaAUCGacCGUCGa -3'
miRNA:   3'- aGUGCUGGCugCC-Cag--UAGCa-GCAGC- -5'
16298 3' -55.2 NC_004084.1 + 9415 0.66 0.803804
Target:  5'- gUCACGAUCGACacggaccgcgcgauGGG-CcgCGaCGUCGa -3'
miRNA:   3'- -AGUGCUGGCUG--------------CCCaGuaGCaGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 2516 0.66 0.787738
Target:  5'- cCACuccuCCGGCGGaUCGUCGUCG-Ca -3'
miRNA:   3'- aGUGcu--GGCUGCCcAGUAGCAGCaGc -5'
16298 3' -55.2 NC_004084.1 + 8131 0.66 0.778077
Target:  5'- -gAUGACCGACGccuGGUCGgcaGaCGUCGa -3'
miRNA:   3'- agUGCUGGCUGC---CCAGUag-CaGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 31320 0.67 0.748276
Target:  5'- uUCugGAuCCGGCucGGGauccggagCAguUCGUCGUCGa -3'
miRNA:   3'- -AGugCU-GGCUG--CCCa-------GU--AGCAGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 52944 0.67 0.707024
Target:  5'- gUCACGACCGGCGGcugggaGcUCGUCa -3'
miRNA:   3'- -AGUGCUGGCUGCCcaguagC-AGCAGc -5'
16298 3' -55.2 NC_004084.1 + 52659 0.67 0.707024
Target:  5'- -uGCGGCgaGACGGag-AUCGUCGUCGa -3'
miRNA:   3'- agUGCUGg-CUGCCcagUAGCAGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 40629 0.69 0.58976
Target:  5'- uUCACGACUGAagaGGGcaaCGUCGaCGUCc -3'
miRNA:   3'- -AGUGCUGGCUg--CCCa--GUAGCaGCAGc -5'
16298 3' -55.2 NC_004084.1 + 21893 0.69 0.626114
Target:  5'- gUCGCGAUCGGCGucucGGUCGgccuccucaucgaguUCGaCGUCGa -3'
miRNA:   3'- -AGUGCUGGCUGC----CCAGU---------------AGCaGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 46128 0.69 0.632545
Target:  5'- gUUACGAgCCGACuGGGUC-UCGUuCGcCGa -3'
miRNA:   3'- -AGUGCU-GGCUG-CCCAGuAGCA-GCaGC- -5'
16298 3' -55.2 NC_004084.1 + 43689 0.68 0.664658
Target:  5'- -uGCGACgGACGGG-CG-CGUCGaCGa -3'
miRNA:   3'- agUGCUGgCUGCCCaGUaGCAGCaGC- -5'
16298 3' -55.2 NC_004084.1 + 41629 0.68 0.675318
Target:  5'- -gGCGACgGucCGGGaCAUCGaCGUCGa -3'
miRNA:   3'- agUGCUGgCu-GCCCaGUAGCaGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 50865 0.68 0.685939
Target:  5'- --uCGGCCGACGGuUCAUCGgCGUa- -3'
miRNA:   3'- aguGCUGGCUGCCcAGUAGCaGCAgc -5'
16298 3' -55.2 NC_004084.1 + 35404 1.1 0.001303
Target:  5'- aUCACGACCGACGGGUCAUCGUCGUCGa -3'
miRNA:   3'- -AGUGCUGGCUGCCCAGUAGCAGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 50991 0.66 0.787738
Target:  5'- cUCGCcACCGuCGGcaUCGcccUCGUCGUCGa -3'
miRNA:   3'- -AGUGcUGGCuGCCc-AGU---AGCAGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 13123 0.66 0.787738
Target:  5'- cCugGAgUuGCGGGcCGUCGUCGUa- -3'
miRNA:   3'- aGugCUgGcUGCCCaGUAGCAGCAgc -5'
16298 3' -55.2 NC_004084.1 + 12742 0.66 0.787738
Target:  5'- gCACGaucucgucgacGCCGAcCGucUCGUCGUUGUCGg -3'
miRNA:   3'- aGUGC-----------UGGCU-GCccAGUAGCAGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 26478 0.66 0.778077
Target:  5'- gCGCG-CCGGCGacguugaguguGGUCGUCGUCuUCc -3'
miRNA:   3'- aGUGCuGGCUGC-----------CCAGUAGCAGcAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.