miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16298 3' -55.2 NC_004084.1 + 215 0.75 0.310478
Target:  5'- gCACGGCCaucGGCGGGggaGUCGUCGUUc -3'
miRNA:   3'- aGUGCUGG---CUGCCCag-UAGCAGCAGc -5'
16298 3' -55.2 NC_004084.1 + 811 0.69 0.621827
Target:  5'- -gGCGAUCGugGaGGUCcUCGUCGa-- -3'
miRNA:   3'- agUGCUGGCugC-CCAGuAGCAGCagc -5'
16298 3' -55.2 NC_004084.1 + 1171 0.68 0.65397
Target:  5'- uUCGCGucaucGCCGACGcGGUCGUggaCGUaGUCGc -3'
miRNA:   3'- -AGUGC-----UGGCUGC-CCAGUA---GCAgCAGC- -5'
16298 3' -55.2 NC_004084.1 + 2427 0.66 0.806589
Target:  5'- aCGCGAUCGugGGcGgugaAUCGacCGUCGa -3'
miRNA:   3'- aGUGCUGGCugCC-Cag--UAGCa-GCAGC- -5'
16298 3' -55.2 NC_004084.1 + 2516 0.66 0.787738
Target:  5'- cCACuccuCCGGCGGaUCGUCGUCG-Ca -3'
miRNA:   3'- aGUGcu--GGCUGCCcAGUAGCAGCaGc -5'
16298 3' -55.2 NC_004084.1 + 3019 0.7 0.551697
Target:  5'- aUCAUG-CCGAguaugucggcgauacCGGGaucaaUCAUCGUCGUCa -3'
miRNA:   3'- -AGUGCuGGCU---------------GCCC-----AGUAGCAGCAGc -5'
16298 3' -55.2 NC_004084.1 + 3348 0.66 0.768273
Target:  5'- -aACcGCCGAUuGGUCGUCGacgugCGUCGa -3'
miRNA:   3'- agUGcUGGCUGcCCAGUAGCa----GCAGC- -5'
16298 3' -55.2 NC_004084.1 + 5112 0.68 0.675318
Target:  5'- cCGCGAUCGcCGGGUCAaCGUacUCGc -3'
miRNA:   3'- aGUGCUGGCuGCCCAGUaGCAgcAGC- -5'
16298 3' -55.2 NC_004084.1 + 5236 0.7 0.537088
Target:  5'- gUCGCGACgGACgaacacgcugGGGUCAgucaUCGgccUCGUCGa -3'
miRNA:   3'- -AGUGCUGgCUG----------CCCAGU----AGC---AGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 6545 0.66 0.768273
Target:  5'- aUCuCGACCGGCGuccGGUaguUCGacUCGUCGa -3'
miRNA:   3'- -AGuGCUGGCUGC---CCAgu-AGC--AGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 8131 0.66 0.778077
Target:  5'- -gAUGACCGACGccuGGUCGgcaGaCGUCGa -3'
miRNA:   3'- agUGCUGGCUGC---CCAGUag-CaGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 9415 0.66 0.803804
Target:  5'- gUCACGAUCGACacggaccgcgcgauGGG-CcgCGaCGUCGa -3'
miRNA:   3'- -AGUGCUGGCUG--------------CCCaGuaGCaGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 11324 0.68 0.675318
Target:  5'- --cCGACCGGCGGGUUGUCGggauuagacaUCGcUCc -3'
miRNA:   3'- aguGCUGGCUGCCCAGUAGC----------AGC-AGc -5'
16298 3' -55.2 NC_004084.1 + 12742 0.66 0.787738
Target:  5'- gCACGaucucgucgacGCCGAcCGucUCGUCGUUGUCGg -3'
miRNA:   3'- aGUGC-----------UGGCU-GCccAGUAGCAGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 13123 0.66 0.787738
Target:  5'- cCugGAgUuGCGGGcCGUCGUCGUa- -3'
miRNA:   3'- aGugCUgGcUGCCCaGUAGCAGCAgc -5'
16298 3' -55.2 NC_004084.1 + 14078 0.76 0.274836
Target:  5'- cCGCGACCGACGuagacGUCGaUGUCGUCGu -3'
miRNA:   3'- aGUGCUGGCUGCc----CAGUaGCAGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 14264 0.71 0.516457
Target:  5'- cCGgGACCagGugGaGGUCcUCGUCGUCGc -3'
miRNA:   3'- aGUgCUGG--CugC-CCAGuAGCAGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 16099 0.66 0.768273
Target:  5'- aUCuCGucCCGAC-GGUCGUCGcgaUCGUCGc -3'
miRNA:   3'- -AGuGCu-GGCUGcCCAGUAGC---AGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 16605 0.68 0.675318
Target:  5'- cUACGGacCCGGCGGGcUCcUCGagGUCGa -3'
miRNA:   3'- aGUGCU--GGCUGCCC-AGuAGCagCAGC- -5'
16298 3' -55.2 NC_004084.1 + 17328 0.67 0.738104
Target:  5'- cCGCGG-CGACGGcccgCAUCGucUCGUCGa -3'
miRNA:   3'- aGUGCUgGCUGCCca--GUAGC--AGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.