miRNA display CGI


Results 1 - 20 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16298 3' -55.2 NC_004084.1 + 35404 1.1 0.001303
Target:  5'- aUCACGACCGACGGGUCAUCGUCGUCGa -3'
miRNA:   3'- -AGUGCUGGCUGCCCAGUAGCAGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 14078 0.76 0.274836
Target:  5'- cCGCGACCGACGuagacGUCGaUGUCGUCGu -3'
miRNA:   3'- aGUGCUGGCUGCc----CAGUaGCAGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 215 0.75 0.310478
Target:  5'- gCACGGCCaucGGCGGGggaGUCGUCGUUc -3'
miRNA:   3'- aGUGCUGG---CUGCCCag-UAGCAGCAGc -5'
16298 3' -55.2 NC_004084.1 + 29066 0.74 0.32569
Target:  5'- cCGCGACCGcccgcuCGGGggCGUCGUCGcCGc -3'
miRNA:   3'- aGUGCUGGCu-----GCCCa-GUAGCAGCaGC- -5'
16298 3' -55.2 NC_004084.1 + 14264 0.71 0.516457
Target:  5'- cCGgGACCagGugGaGGUCcUCGUCGUCGc -3'
miRNA:   3'- aGUgCUGG--CugC-CCAGuAGCAGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 52944 0.7 0.537088
Target:  5'- aUCugG-CCGuCGGcGUCGUCGugaUCGUCGc -3'
miRNA:   3'- -AGugCuGGCuGCC-CAGUAGC---AGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 5236 0.7 0.537088
Target:  5'- gUCGCGACgGACgaacacgcugGGGUCAgucaUCGgccUCGUCGa -3'
miRNA:   3'- -AGUGCUGgCUG----------CCCAGU----AGC---AGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 3019 0.7 0.551697
Target:  5'- aUCAUG-CCGAguaugucggcgauacCGGGaucaaUCAUCGUCGUCa -3'
miRNA:   3'- -AGUGCuGGCU---------------GCCC-----AGUAGCAGCAGc -5'
16298 3' -55.2 NC_004084.1 + 54120 0.7 0.557996
Target:  5'- cCGCGAucaCCGGCGGGaCGUCGUggacuuugaggaUGUCGu -3'
miRNA:   3'- aGUGCU---GGCUGCCCaGUAGCA------------GCAGC- -5'
16298 3' -55.2 NC_004084.1 + 46270 0.7 0.575946
Target:  5'- -uGCGACauccaucgcuucguCGACGGaGUCGUaGUCGUCGa -3'
miRNA:   3'- agUGCUG--------------GCUGCC-CAGUAgCAGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 40629 0.69 0.58976
Target:  5'- uUCACGACUGAagaGGGcaaCGUCGaCGUCc -3'
miRNA:   3'- -AGUGCUGGCUg--CCCa--GUAGCaGCAGc -5'
16298 3' -55.2 NC_004084.1 + 811 0.69 0.621827
Target:  5'- -gGCGAUCGugGaGGUCcUCGUCGa-- -3'
miRNA:   3'- agUGCUGGCugC-CCAGuAGCAGCagc -5'
16298 3' -55.2 NC_004084.1 + 21893 0.69 0.626114
Target:  5'- gUCGCGAUCGGCGucucGGUCGgccuccucaucgaguUCGaCGUCGa -3'
miRNA:   3'- -AGUGCUGGCUGC----CCAGU---------------AGCaGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 46128 0.69 0.632545
Target:  5'- gUUACGAgCCGACuGGGUC-UCGUuCGcCGa -3'
miRNA:   3'- -AGUGCU-GGCUG-CCCAGuAGCA-GCaGC- -5'
16298 3' -55.2 NC_004084.1 + 48991 0.69 0.632545
Target:  5'- gUCGCGGCCcaucGCGcGGUCcgUGUCGaUCGu -3'
miRNA:   3'- -AGUGCUGGc---UGC-CCAGuaGCAGC-AGC- -5'
16298 3' -55.2 NC_004084.1 + 1171 0.68 0.65397
Target:  5'- uUCGCGucaucGCCGACGcGGUCGUggaCGUaGUCGc -3'
miRNA:   3'- -AGUGC-----UGGCUGC-CCAGUA---GCAgCAGC- -5'
16298 3' -55.2 NC_004084.1 + 43689 0.68 0.664658
Target:  5'- -uGCGACgGACGGG-CG-CGUCGaCGa -3'
miRNA:   3'- agUGCUGgCUGCCCaGUaGCAGCaGC- -5'
16298 3' -55.2 NC_004084.1 + 19646 0.68 0.664658
Target:  5'- -aGCGcCCGAa-GGUCGUCGUgCGUCa -3'
miRNA:   3'- agUGCuGGCUgcCCAGUAGCA-GCAGc -5'
16298 3' -55.2 NC_004084.1 + 5112 0.68 0.675318
Target:  5'- cCGCGAUCGcCGGGUCAaCGUacUCGc -3'
miRNA:   3'- aGUGCUGGCuGCCCAGUaGCAgcAGC- -5'
16298 3' -55.2 NC_004084.1 + 41629 0.68 0.675318
Target:  5'- -gGCGACgGucCGGGaCAUCGaCGUCGa -3'
miRNA:   3'- agUGCUGgCu-GCCCaGUAGCaGCAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.