Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16308 | 5' | -65.6 | NC_004084.1 | + | 35945 | 0.66 | 0.299165 |
Target: 5'- cCGGCGUCgCCgGGGUcGGCGGcCGUGa -3' miRNA: 3'- uGCUGCGG-GGgCUCGcCCGCCaGCGC- -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 35970 | 0.66 | 0.299165 |
Target: 5'- cGCGAgCGCCCCCGAagacGGCGGUauugGCc -3' miRNA: 3'- -UGCU-GCGGGGGCUcgc-CCGCCAg---CGc -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 26880 | 0.66 | 0.292358 |
Target: 5'- cGCGAUGUCCuCCGAgGCGaucGCGGcauccaUCGCGa -3' miRNA: 3'- -UGCUGCGGG-GGCU-CGCc--CGCC------AGCGC- -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 54657 | 0.66 | 0.292358 |
Target: 5'- aACGGCaCCUgUGucAGCGGGUuuccGGUCGCGa -3' miRNA: 3'- -UGCUGcGGGgGC--UCGCCCG----CCAGCGC- -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 29016 | 0.66 | 0.291684 |
Target: 5'- cGCGACGCCCCagGAGUGGcCGcccgaccGUUGCu -3' miRNA: 3'- -UGCUGCGGGGg-CUCGCCcGC-------CAGCGc -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 44014 | 0.66 | 0.285012 |
Target: 5'- gACGAacuucgagaacauCGCCCCgaucucgcCGAGUGGGaGGUgCGCGa -3' miRNA: 3'- -UGCU-------------GCGGGG--------GCUCGCCCgCCA-GCGC- -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 41199 | 0.66 | 0.27911 |
Target: 5'- cACGACGCCCgCGAcGCuGGCGaaaCGCc -3' miRNA: 3'- -UGCUGCGGGgGCU-CGcCCGCca-GCGc -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 13753 | 0.66 | 0.278461 |
Target: 5'- uCGGCucGCCCUCGAGgucgcgcUGGGCGGgcucggagaUCGCGu -3' miRNA: 3'- uGCUG--CGGGGGCUC-------GCCCGCC---------AGCGC- -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 1308 | 0.66 | 0.266344 |
Target: 5'- -gGACGUCCUCGAcuggauCGaGGCGGUCuGCGu -3' miRNA: 3'- ugCUGCGGGGGCUc-----GC-CCGCCAG-CGC- -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 44598 | 0.67 | 0.254055 |
Target: 5'- -aGAgGUCaucgCCGAGUGGGCcgaucgccucGGUCGCGa -3' miRNA: 3'- ugCUgCGGg---GGCUCGCCCG----------CCAGCGC- -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 1693 | 0.67 | 0.248087 |
Target: 5'- gAUGAUGUCCggCCGAGUGugcuucaGUGGUCGCGg -3' miRNA: 3'- -UGCUGCGGG--GGCUCGCc------CGCCAGCGC- -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 50016 | 0.67 | 0.248087 |
Target: 5'- cACGuuGUCgCCGAGCGGGgugucccgguCGGUCaGCGu -3' miRNA: 3'- -UGCugCGGgGGCUCGCCC----------GCCAG-CGC- -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 21460 | 0.67 | 0.242235 |
Target: 5'- gACGAggaaccggcuCGCCCUCGAGgGcGGCGaUCGCc -3' miRNA: 3'- -UGCU----------GCGGGGGCUCgC-CCGCcAGCGc -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 46862 | 0.67 | 0.230877 |
Target: 5'- gUGaACGUCUCCu-GUGGGCGGUCuGCGa -3' miRNA: 3'- uGC-UGCGGGGGcuCGCCCGCCAG-CGC- -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 35048 | 0.67 | 0.230877 |
Target: 5'- gAUGAuCGCCUgauaCCG-GCaGGCGGUCGCc -3' miRNA: 3'- -UGCU-GCGGG----GGCuCGcCCGCCAGCGc -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 26147 | 0.68 | 0.219971 |
Target: 5'- aGC-ACGCCCagguUGGGCGGGCaGUCGaCGa -3' miRNA: 3'- -UGcUGCGGGg---GCUCGCCCGcCAGC-GC- -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 45962 | 0.68 | 0.204439 |
Target: 5'- aACGAUGUgUCCGAGuCGGcuccuGCGGUCGUc -3' miRNA: 3'- -UGCUGCGgGGGCUC-GCC-----CGCCAGCGc -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 53219 | 0.68 | 0.202442 |
Target: 5'- uCGAguCGCaCCgucgugucaucuaCGAGCGGGCGGUCGuCGa -3' miRNA: 3'- uGCU--GCG-GGg------------GCUCGCCCGCCAGC-GC- -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 58043 | 0.68 | 0.199477 |
Target: 5'- gGCGACGUCCCCGGGCucGCGG-Ca-- -3' miRNA: 3'- -UGCUGCGGGGGCUCGccCGCCaGcgc -5' |
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16308 | 5' | -65.6 | NC_004084.1 | + | 4297 | 0.69 | 0.189867 |
Target: 5'- cACGACGuCCCgCCGGugaucGCGGGC-GUCGuCGa -3' miRNA: 3'- -UGCUGC-GGG-GGCU-----CGCCCGcCAGC-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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