miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16311 5' -54.4 NC_004084.1 + 29442 0.7 0.562349
Target:  5'- aGCuUCACCG-CGAAC-GCGgCGUGGGCg -3'
miRNA:   3'- gCG-AGUGGUaGCUUGaCGC-GCGCUUG- -5'
16311 5' -54.4 NC_004084.1 + 3865 0.7 0.551524
Target:  5'- aGCUCGCCcUCGGugauACaGCGC-CGGACg -3'
miRNA:   3'- gCGAGUGGuAGCU----UGaCGCGcGCUUG- -5'
16311 5' -54.4 NC_004084.1 + 13755 0.72 0.400226
Target:  5'- gGCUCGCCcUCGAGgUcGCGCuggGCGGGCu -3'
miRNA:   3'- gCGAGUGGuAGCUUgA-CGCG---CGCUUG- -5'
16311 5' -54.4 NC_004084.1 + 10488 0.72 0.400226
Target:  5'- cCGCUCGCCAUUGccCUGgauCGCGCGGc- -3'
miRNA:   3'- -GCGAGUGGUAGCuuGAC---GCGCGCUug -5'
16311 5' -54.4 NC_004084.1 + 11039 0.74 0.347507
Target:  5'- aGCUCGCCGUCGA----CGaCGCGGACg -3'
miRNA:   3'- gCGAGUGGUAGCUugacGC-GCGCUUG- -5'
16311 5' -54.4 NC_004084.1 + 15756 0.74 0.323072
Target:  5'- aCGCUCGggaggacgUCGUCGGACUGCGcCGCcGACu -3'
miRNA:   3'- -GCGAGU--------GGUAGCUUGACGC-GCGcUUG- -5'
16311 5' -54.4 NC_004084.1 + 27552 0.8 0.146637
Target:  5'- aGCUCGCCAUCGAAC-GUGacgaGCGGGCc -3'
miRNA:   3'- gCGAGUGGUAGCUUGaCGCg---CGCUUG- -5'
16311 5' -54.4 NC_004084.1 + 1552 0.68 0.628196
Target:  5'- gGCgacgGCCGUCGAGCcggaGCcCGCGAACg -3'
miRNA:   3'- gCGag--UGGUAGCUUGa---CGcGCGCUUG- -5'
16311 5' -54.4 NC_004084.1 + 9533 0.68 0.650271
Target:  5'- uCGcCUCGCCGUCGuGCauCGuCGCGAGCc -3'
miRNA:   3'- -GC-GAGUGGUAGCuUGacGC-GCGCUUG- -5'
16311 5' -54.4 NC_004084.1 + 54020 0.66 0.792112
Target:  5'- aGCUCGCCgaaGUCGuGCUGCuuggGCuggaucgucuccucaGCGAACu -3'
miRNA:   3'- gCGAGUGG---UAGCuUGACG----CG---------------CGCUUG- -5'
16311 5' -54.4 NC_004084.1 + 11979 0.66 0.788178
Target:  5'- uGUUC-UCGUCGAACUGCaCGaGGACg -3'
miRNA:   3'- gCGAGuGGUAGCUUGACGcGCgCUUG- -5'
16311 5' -54.4 NC_004084.1 + 29638 0.66 0.768131
Target:  5'- gGCUCcggaCGUCG-ACgacCGCGCGGACa -3'
miRNA:   3'- gCGAGug--GUAGCuUGac-GCGCGCUUG- -5'
16311 5' -54.4 NC_004084.1 + 21471 0.66 0.768131
Target:  5'- gGCUCGCCcUCGAGg-GCG-GCGAu- -3'
miRNA:   3'- gCGAGUGGuAGCUUgaCGCgCGCUug -5'
16311 5' -54.4 NC_004084.1 + 32150 0.66 0.757891
Target:  5'- aGCggCACCAUCugGGACacggGCGacuuCGCGAACg -3'
miRNA:   3'- gCGa-GUGGUAG--CUUGa---CGC----GCGCUUG- -5'
16311 5' -54.4 NC_004084.1 + 45031 0.67 0.715751
Target:  5'- gGUUCAgC-UCGAACUgGCGCuCGGACu -3'
miRNA:   3'- gCGAGUgGuAGCUUGA-CGCGcGCUUG- -5'
16311 5' -54.4 NC_004084.1 + 57761 0.67 0.715751
Target:  5'- gCGUUCACgGagGAGCuUGCGgGCGAu- -3'
miRNA:   3'- -GCGAGUGgUagCUUG-ACGCgCGCUug -5'
16311 5' -54.4 NC_004084.1 + 49856 0.67 0.694136
Target:  5'- uCGCUCACCuuGUCGGACU-CG-GUGAGg -3'
miRNA:   3'- -GCGAGUGG--UAGCUUGAcGCgCGCUUg -5'
16311 5' -54.4 NC_004084.1 + 53948 0.68 0.687601
Target:  5'- gGCuUCGCCAgcUCGAACUcgaucguccagucggGCGCGuCGAGg -3'
miRNA:   3'- gCG-AGUGGU--AGCUUGA---------------CGCGC-GCUUg -5'
16311 5' -54.4 NC_004084.1 + 57907 0.68 0.660189
Target:  5'- cCGCUCAUCGaaguccgaccgcUUGAACUGCGCcagcaggaucgagGCGAc- -3'
miRNA:   3'- -GCGAGUGGU------------AGCUUGACGCG-------------CGCUug -5'
16311 5' -54.4 NC_004084.1 + 28820 1.11 0.000993
Target:  5'- cCGCUCACCAUCGAACUGCGCGCGAACg -3'
miRNA:   3'- -GCGAGUGGUAGCUUGACGCGCGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.