miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16311 5' -54.4 NC_004084.1 + 40585 0.71 0.488161
Target:  5'- aGgUCACCAUCGAACU-CG-GCGAGg -3'
miRNA:   3'- gCgAGUGGUAGCUUGAcGCgCGCUUg -5'
16311 5' -54.4 NC_004084.1 + 51184 0.65 0.796991
Target:  5'- aCGCgccgAUCGUCGAggucggcGCUG-GCGCGGGCu -3'
miRNA:   3'- -GCGag--UGGUAGCU-------UGACgCGCGCUUG- -5'
16311 5' -54.4 NC_004084.1 + 11704 0.66 0.788178
Target:  5'- gGCgucggaaGCCAUCGAAgagaUGgGCGCuGAGCa -3'
miRNA:   3'- gCGag-----UGGUAGCUUg---ACgCGCG-CUUG- -5'
16311 5' -54.4 NC_004084.1 + 39647 0.66 0.768131
Target:  5'- aCGCgaCGCCGagGAACUcGCGCGCu--- -3'
miRNA:   3'- -GCGa-GUGGUagCUUGA-CGCGCGcuug -5'
16311 5' -54.4 NC_004084.1 + 2008 0.66 0.747521
Target:  5'- aGgaCGCgAUCGAguucgacucccaGCUGgGCGCGAAg -3'
miRNA:   3'- gCgaGUGgUAGCU------------UGACgCGCGCUUg -5'
16311 5' -54.4 NC_004084.1 + 28262 0.67 0.737033
Target:  5'- aGUUCACCGUCGcGGCUuCGacuCGUGGACg -3'
miRNA:   3'- gCGAGUGGUAGC-UUGAcGC---GCGCUUG- -5'
16311 5' -54.4 NC_004084.1 + 40204 0.67 0.726439
Target:  5'- uCGUUCACC-UCGAGCUGgacgaggaGaCGCGGAa -3'
miRNA:   3'- -GCGAGUGGuAGCUUGACg-------C-GCGCUUg -5'
16311 5' -54.4 NC_004084.1 + 21657 0.67 0.726439
Target:  5'- cCGaCUCgaACUAUCGAGCccgacugcagguUGCGUuGCGAGCa -3'
miRNA:   3'- -GC-GAG--UGGUAGCUUG------------ACGCG-CGCUUG- -5'
16311 5' -54.4 NC_004084.1 + 32630 0.67 0.694136
Target:  5'- uCGCUCGCCAccUgGAgggauuccaugGCUGagaaGCGCGAccGCa -3'
miRNA:   3'- -GCGAGUGGU--AgCU-----------UGACg---CGCGCU--UG- -5'
16311 5' -54.4 NC_004084.1 + 51829 0.68 0.67228
Target:  5'- cCGCcgacugUCGCCAcucUCGAAgaGCGCGUGGc- -3'
miRNA:   3'- -GCG------AGUGGU---AGCUUgaCGCGCGCUug -5'
16311 5' -54.4 NC_004084.1 + 39859 0.71 0.488161
Target:  5'- cCGCggCGCCGUCGAgcacgcugaGCUGCaGUGCGGu- -3'
miRNA:   3'- -GCGa-GUGGUAGCU---------UGACG-CGCGCUug -5'
16311 5' -54.4 NC_004084.1 + 43984 0.7 0.540763
Target:  5'- aCGCUCuACCG-CGAACUGC-C-CGAGCu -3'
miRNA:   3'- -GCGAG-UGGUaGCUUGACGcGcGCUUG- -5'
16311 5' -54.4 NC_004084.1 + 43763 0.7 0.551524
Target:  5'- aCGCUCGCgggCAUCG-ACUGgGCGCucGCc -3'
miRNA:   3'- -GCGAGUG---GUAGCuUGACgCGCGcuUG- -5'
16311 5' -54.4 NC_004084.1 + 30051 0.69 0.569961
Target:  5'- cCGCUCgcgucguugugccaGCCGUCGAgGCUGC-CGCGGu- -3'
miRNA:   3'- -GCGAG--------------UGGUAGCU-UGACGcGCGCUug -5'
16311 5' -54.4 NC_004084.1 + 28996 0.69 0.584161
Target:  5'- aGCUCGCCGUCGA-CgGCaacCGCGAc- -3'
miRNA:   3'- gCGAGUGGUAGCUuGaCGc--GCGCUug -5'
16311 5' -54.4 NC_004084.1 + 29198 0.69 0.606133
Target:  5'- uGCUCGgCGUCGAugUuccagaGCGCGUcGACg -3'
miRNA:   3'- gCGAGUgGUAGCUugA------CGCGCGcUUG- -5'
16311 5' -54.4 NC_004084.1 + 27351 0.68 0.66129
Target:  5'- uGCUCugguCCAUCGGcaccgacgGCUG-GCGCGGGa -3'
miRNA:   3'- gCGAGu---GGUAGCU--------UGACgCGCGCUUg -5'
16311 5' -54.4 NC_004084.1 + 28820 1.11 0.000993
Target:  5'- cCGCUCACCAUCGAACUGCGCGCGAACg -3'
miRNA:   3'- -GCGAGUGGUAGCUUGACGCGCGCUUG- -5'
16311 5' -54.4 NC_004084.1 + 11979 0.66 0.788178
Target:  5'- uGUUC-UCGUCGAACUGCaCGaGGACg -3'
miRNA:   3'- gCGAGuGGUAGCUUGACGcGCgCUUG- -5'
16311 5' -54.4 NC_004084.1 + 29638 0.66 0.768131
Target:  5'- gGCUCcggaCGUCG-ACgacCGCGCGGACa -3'
miRNA:   3'- gCGAGug--GUAGCuUGac-GCGCGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.