miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16311 5' -54.4 NC_004084.1 + 1552 0.68 0.628196
Target:  5'- gGCgacgGCCGUCGAGCcggaGCcCGCGAACg -3'
miRNA:   3'- gCGag--UGGUAGCUUGa---CGcGCGCUUG- -5'
16311 5' -54.4 NC_004084.1 + 2008 0.66 0.747521
Target:  5'- aGgaCGCgAUCGAguucgacucccaGCUGgGCGCGAAg -3'
miRNA:   3'- gCgaGUGgUAGCU------------UGACgCGCGCUUg -5'
16311 5' -54.4 NC_004084.1 + 3865 0.7 0.551524
Target:  5'- aGCUCGCCcUCGGugauACaGCGC-CGGACg -3'
miRNA:   3'- gCGAGUGGuAGCU----UGaCGCGcGCUUG- -5'
16311 5' -54.4 NC_004084.1 + 9533 0.68 0.650271
Target:  5'- uCGcCUCGCCGUCGuGCauCGuCGCGAGCc -3'
miRNA:   3'- -GC-GAGUGGUAGCuUGacGC-GCGCUUG- -5'
16311 5' -54.4 NC_004084.1 + 10488 0.72 0.400226
Target:  5'- cCGCUCGCCAUUGccCUGgauCGCGCGGc- -3'
miRNA:   3'- -GCGAGUGGUAGCuuGAC---GCGCGCUug -5'
16311 5' -54.4 NC_004084.1 + 11039 0.74 0.347507
Target:  5'- aGCUCGCCGUCGA----CGaCGCGGACg -3'
miRNA:   3'- gCGAGUGGUAGCUugacGC-GCGCUUG- -5'
16311 5' -54.4 NC_004084.1 + 11704 0.66 0.788178
Target:  5'- gGCgucggaaGCCAUCGAAgagaUGgGCGCuGAGCa -3'
miRNA:   3'- gCGag-----UGGUAGCUUg---ACgCGCG-CUUG- -5'
16311 5' -54.4 NC_004084.1 + 11979 0.66 0.788178
Target:  5'- uGUUC-UCGUCGAACUGCaCGaGGACg -3'
miRNA:   3'- gCGAGuGGUAGCUUGACGcGCgCUUG- -5'
16311 5' -54.4 NC_004084.1 + 13755 0.72 0.400226
Target:  5'- gGCUCGCCcUCGAGgUcGCGCuggGCGGGCu -3'
miRNA:   3'- gCGAGUGGuAGCUUgA-CGCG---CGCUUG- -5'
16311 5' -54.4 NC_004084.1 + 15756 0.74 0.323072
Target:  5'- aCGCUCGggaggacgUCGUCGGACUGCGcCGCcGACu -3'
miRNA:   3'- -GCGAGU--------GGUAGCUUGACGC-GCGcUUG- -5'
16311 5' -54.4 NC_004084.1 + 21471 0.66 0.768131
Target:  5'- gGCUCGCCcUCGAGg-GCG-GCGAu- -3'
miRNA:   3'- gCGAGUGGuAGCUUgaCGCgCGCUug -5'
16311 5' -54.4 NC_004084.1 + 21657 0.67 0.726439
Target:  5'- cCGaCUCgaACUAUCGAGCccgacugcagguUGCGUuGCGAGCa -3'
miRNA:   3'- -GC-GAG--UGGUAGCUUG------------ACGCG-CGCUUG- -5'
16311 5' -54.4 NC_004084.1 + 23598 0.69 0.573231
Target:  5'- uGCUcCGCCGg-GAACUGCGCuCGAAg -3'
miRNA:   3'- gCGA-GUGGUagCUUGACGCGcGCUUg -5'
16311 5' -54.4 NC_004084.1 + 27351 0.68 0.66129
Target:  5'- uGCUCugguCCAUCGGcaccgacgGCUG-GCGCGGGa -3'
miRNA:   3'- gCGAGu---GGUAGCU--------UGACgCGCGCUUg -5'
16311 5' -54.4 NC_004084.1 + 27552 0.8 0.146637
Target:  5'- aGCUCGCCAUCGAAC-GUGacgaGCGGGCc -3'
miRNA:   3'- gCGAGUGGUAGCUUGaCGCg---CGCUUG- -5'
16311 5' -54.4 NC_004084.1 + 28262 0.67 0.737033
Target:  5'- aGUUCACCGUCGcGGCUuCGacuCGUGGACg -3'
miRNA:   3'- gCGAGUGGUAGC-UUGAcGC---GCGCUUG- -5'
16311 5' -54.4 NC_004084.1 + 28680 0.68 0.628196
Target:  5'- aGCUCAaCGUCGAGCacUGgGCGGACg -3'
miRNA:   3'- gCGAGUgGUAGCUUGacGCgCGCUUG- -5'
16311 5' -54.4 NC_004084.1 + 28820 1.11 0.000993
Target:  5'- cCGCUCACCAUCGAACUGCGCGCGAACg -3'
miRNA:   3'- -GCGAGUGGUAGCUUGACGCGCGCUUG- -5'
16311 5' -54.4 NC_004084.1 + 28996 0.69 0.584161
Target:  5'- aGCUCGCCGUCGA-CgGCaacCGCGAc- -3'
miRNA:   3'- gCGAGUGGUAGCUuGaCGc--GCGCUug -5'
16311 5' -54.4 NC_004084.1 + 29198 0.69 0.606133
Target:  5'- uGCUCGgCGUCGAugUuccagaGCGCGUcGACg -3'
miRNA:   3'- gCGAGUgGUAGCUugA------CGCGCGcUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.