miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16316 3' -56.4 NC_004084.1 + 56909 0.66 0.678592
Target:  5'- gUGUAGAGGUCCUCGucgggacggcgGACuUCGuAGUCg -3'
miRNA:   3'- aGCAUCUCCAGGAGC-----------UUG-GGC-UCGGg -5'
16316 3' -56.4 NC_004084.1 + 56840 0.68 0.582129
Target:  5'- gCGc--GGG-CCUCGAGCCuCGGGCCa -3'
miRNA:   3'- aGCaucUCCaGGAGCUUGG-GCUCGGg -5'
16316 3' -56.4 NC_004084.1 + 54747 0.66 0.710334
Target:  5'- aUUGaGGAGuUCCUCGAcGCCa-AGCCCa -3'
miRNA:   3'- -AGCaUCUCcAGGAGCU-UGGgcUCGGG- -5'
16316 3' -56.4 NC_004084.1 + 53463 0.67 0.650765
Target:  5'- cUC-UGGAGccacugcucgauuucGUCCUCGAgcgGCUgGAGCCCc -3'
miRNA:   3'- -AGcAUCUC---------------CAGGAGCU---UGGgCUCGGG- -5'
16316 3' -56.4 NC_004084.1 + 52695 0.67 0.635724
Target:  5'- cCGaucGAGGaCCUCG-GCCCGAGCg- -3'
miRNA:   3'- aGCau-CUCCaGGAGCuUGGGCUCGgg -5'
16316 3' -56.4 NC_004084.1 + 52251 0.66 0.699813
Target:  5'- ----cGAGGUCCaccUgGAGCCCGAucGCCa -3'
miRNA:   3'- agcauCUCCAGG---AgCUUGGGCU--CGGg -5'
16316 3' -56.4 NC_004084.1 + 52047 0.76 0.193169
Target:  5'- cUCGUAGAGGUuuuUCUCGAGgUCGcGCCCc -3'
miRNA:   3'- -AGCAUCUCCA---GGAGCUUgGGCuCGGG- -5'
16316 3' -56.4 NC_004084.1 + 50269 0.66 0.689228
Target:  5'- gCGgcGAGGUCCUCGAcgucugCCGA-CCa -3'
miRNA:   3'- aGCauCUCCAGGAGCUug----GGCUcGGg -5'
16316 3' -56.4 NC_004084.1 + 49711 0.71 0.43047
Target:  5'- cCGaGGAGGUUCUUGcagaacucCCCGAGUCCu -3'
miRNA:   3'- aGCaUCUCCAGGAGCuu------GGGCUCGGG- -5'
16316 3' -56.4 NC_004084.1 + 49399 0.83 0.072229
Target:  5'- uUCGUAGucgucguGGUCCUCGAACCagGAGUCCu -3'
miRNA:   3'- -AGCAUCu------CCAGGAGCUUGGg-CUCGGG- -5'
16316 3' -56.4 NC_004084.1 + 48687 0.68 0.592802
Target:  5'- cCGUAGuacgacGGGgCCUCGAAUCCGGcgacGUCCu -3'
miRNA:   3'- aGCAUC------UCCaGGAGCUUGGGCU----CGGG- -5'
16316 3' -56.4 NC_004084.1 + 45400 0.66 0.678592
Target:  5'- gUCGUGaagguguugcucGAGGUCgUCGA--UCGAGCCg -3'
miRNA:   3'- -AGCAU------------CUCCAGgAGCUugGGCUCGGg -5'
16316 3' -56.4 NC_004084.1 + 43910 0.68 0.603506
Target:  5'- ---aAGAGGgCCaCGAACCCGAGUuggCCg -3'
miRNA:   3'- agcaUCUCCaGGaGCUUGGGCUCG---GG- -5'
16316 3' -56.4 NC_004084.1 + 43341 0.7 0.459097
Target:  5'- -aGUGGAcGGU-CUCGAACgCCGAGUCg -3'
miRNA:   3'- agCAUCU-CCAgGAGCUUG-GGCUCGGg -5'
16316 3' -56.4 NC_004084.1 + 39931 0.69 0.52951
Target:  5'- cUCGcuGAGGUuccacgucgacaCCUCGAACUCGAGCg- -3'
miRNA:   3'- -AGCauCUCCA------------GGAGCUUGGGCUCGgg -5'
16316 3' -56.4 NC_004084.1 + 38081 0.67 0.614233
Target:  5'- cUCGUGauGAGGUCCgu--GCUCuAGCCCg -3'
miRNA:   3'- -AGCAU--CUCCAGGagcuUGGGcUCGGG- -5'
16316 3' -56.4 NC_004084.1 + 35928 0.66 0.699813
Target:  5'- -aGUGGAcuacGUCC-CGAACUgGAGCCg -3'
miRNA:   3'- agCAUCUc---CAGGaGCUUGGgCUCGGg -5'
16316 3' -56.4 NC_004084.1 + 35773 0.71 0.393984
Target:  5'- cCGUAGAGGU--UCGAGCCgGAGgCgCCg -3'
miRNA:   3'- aGCAUCUCCAggAGCUUGGgCUC-G-GG- -5'
16316 3' -56.4 NC_004084.1 + 35283 0.68 0.578935
Target:  5'- cUCGgcgcuggGGAGGUCCUCGAucguuucgacggucACCUuuccGGCCUu -3'
miRNA:   3'- -AGCa------UCUCCAGGAGCU--------------UGGGc---UCGGG- -5'
16316 3' -56.4 NC_004084.1 + 33641 0.7 0.488707
Target:  5'- uUCG-AGaAGGUCUUCGggUuuGAGUUCg -3'
miRNA:   3'- -AGCaUC-UCCAGGAGCuuGggCUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.