Results 21 - 40 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16323 | 3' | -59.7 | NC_004084.1 | + | 18885 | 0.66 | 0.519746 |
Target: 5'- gGCCaucaCGAGGagaUCCUCGAggACGuCGCg -3' miRNA: 3'- gCGGcg--GCUCC---AGGAGCUagUGC-GCG- -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 19964 | 0.68 | 0.405847 |
Target: 5'- aGCCgGCCGuGGUUgaCGAcgucgacgUCGCGCGUu -3' miRNA: 3'- gCGG-CGGCuCCAGgaGCU--------AGUGCGCG- -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 20025 | 0.76 | 0.137713 |
Target: 5'- gGCCGUaCGGuuGGUCCUCGGUCGCcuucccGCGCu -3' miRNA: 3'- gCGGCG-GCU--CCAGGAGCUAGUG------CGCG- -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 20846 | 0.69 | 0.388422 |
Target: 5'- uCGCuCGCCGAGGguggcaCgUCGAcCGCGCcgGCg -3' miRNA: 3'- -GCG-GCGGCUCCa-----GgAGCUaGUGCG--CG- -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 21474 | 0.68 | 0.414742 |
Target: 5'- uCGCCcUCGAGGgcggcgaucgCCUCGGUUGCGuCGUa -3' miRNA: 3'- -GCGGcGGCUCCa---------GGAGCUAGUGC-GCG- -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 22883 | 1.11 | 0.000328 |
Target: 5'- uCGCCGCCGAGGUCCUCGAUCACGCGCa -3' miRNA: 3'- -GCGGCGGCUCCAGGAGCUAGUGCGCG- -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 23286 | 0.66 | 0.519746 |
Target: 5'- aGCgGCCGAccaGUCC-CGAgcgaGCGCGUg -3' miRNA: 3'- gCGgCGGCUc--CAGGaGCUag--UGCGCG- -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 24998 | 0.68 | 0.397073 |
Target: 5'- aCGCgaUGuuGAGGcCCUCGuaCGCGUGCg -3' miRNA: 3'- -GCG--GCggCUCCaGGAGCuaGUGCGCG- -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 26051 | 0.66 | 0.540012 |
Target: 5'- aGCUGCUugaaGAGaagCUCGAUCGCGCGg -3' miRNA: 3'- gCGGCGG----CUCcagGAGCUAGUGCGCg -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 26387 | 0.74 | 0.171667 |
Target: 5'- uCGUCGuaGAGGUCCUCGAacccgagcccuuccgUCGCGUGg -3' miRNA: 3'- -GCGGCggCUCCAGGAGCU---------------AGUGCGCg -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 26720 | 0.67 | 0.460943 |
Target: 5'- aGCCGCUGAGGcCCgcUCGGccCACaGCGa -3' miRNA: 3'- gCGGCGGCUCCaGG--AGCUa-GUG-CGCg -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 27657 | 0.69 | 0.34627 |
Target: 5'- uGCCGCCGGGGauccgguUCCUCG-UCAUcuUGCu -3' miRNA: 3'- gCGGCGGCUCC-------AGGAGCuAGUGc-GCG- -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 28091 | 0.66 | 0.519746 |
Target: 5'- uCGCCGacggucaacgguUCGGGGUgcgCCUCGAcgaGCGCGUc -3' miRNA: 3'- -GCGGC------------GGCUCCA---GGAGCUag-UGCGCG- -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 28335 | 0.67 | 0.457146 |
Target: 5'- uCGCCGCCGuccuucuucucgcGGacgaguagcgguUCCUCGGUCagcguuucgACGUGCa -3' miRNA: 3'- -GCGGCGGCu------------CC------------AGGAGCUAG---------UGCGCG- -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 28389 | 0.67 | 0.499786 |
Target: 5'- gGCCcCCGcGaGaCCUCGAUCGgCGCGUa -3' miRNA: 3'- gCGGcGGCuC-CaGGAGCUAGU-GCGCG- -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 29427 | 0.67 | 0.489934 |
Target: 5'- uCGCgGUCaucAGG-CCgacgUCGGUCGCGCGCu -3' miRNA: 3'- -GCGgCGGc--UCCaGG----AGCUAGUGCGCG- -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 29565 | 0.73 | 0.200321 |
Target: 5'- gGCCGuuGAGGgCCaucgccgggugggcgUCGuUCGCGCGCa -3' miRNA: 3'- gCGGCggCUCCaGG---------------AGCuAGUGCGCG- -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 30027 | 0.67 | 0.498797 |
Target: 5'- gCGCCGaUCGAGGUCUcgCGGgggccgcUCGCGuCGUu -3' miRNA: 3'- -GCGGC-GGCUCCAGGa-GCU-------AGUGC-GCG- -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 30114 | 0.66 | 0.544098 |
Target: 5'- aCGUCGCUGGGGagcgggccggggaacUgCUCGAUCuccauucCGUGCg -3' miRNA: 3'- -GCGGCGGCUCC---------------AgGAGCUAGu------GCGCG- -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 35099 | 0.7 | 0.301727 |
Target: 5'- uGaCCGCUucuGGUacgcgcUCUCGGUCACGCGCu -3' miRNA: 3'- gC-GGCGGcu-CCA------GGAGCUAGUGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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