miRNA display CGI


Results 1 - 20 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16323 3' -59.7 NC_004084.1 + 394 0.71 0.29463
Target:  5'- uCGCCGCCGAugucgcagacGUCgUCGAUCugGaCGUc -3'
miRNA:   3'- -GCGGCGGCUc---------CAGgAGCUAGugC-GCG- -5'
16323 3' -59.7 NC_004084.1 + 683 0.66 0.550246
Target:  5'- gGCuuCGUCGAcGUCCUCGAgcggugCACGCa- -3'
miRNA:   3'- gCG--GCGGCUcCAGGAGCUa-----GUGCGcg -5'
16323 3' -59.7 NC_004084.1 + 1015 0.67 0.489934
Target:  5'- uCGCCGgCGAcGUCgacgCGAUCggggGCGCGCu -3'
miRNA:   3'- -GCGGCgGCUcCAGga--GCUAG----UGCGCG- -5'
16323 3' -59.7 NC_004084.1 + 1053 0.68 0.432885
Target:  5'- -uUCGCCGAGGUCgaacagccaCUCG-UCGCGCa- -3'
miRNA:   3'- gcGGCGGCUCCAG---------GAGCuAGUGCGcg -5'
16323 3' -59.7 NC_004084.1 + 1120 0.73 0.198288
Target:  5'- uCGUCGagGAGGUCCUgGAUgGCGCGg -3'
miRNA:   3'- -GCGGCggCUCCAGGAgCUAgUGCGCg -5'
16323 3' -59.7 NC_004084.1 + 1753 0.66 0.529844
Target:  5'- cCGCCGCCGAaGUaCCgagCGGggcCugGCGa -3'
miRNA:   3'- -GCGGCGGCUcCA-GGa--GCUa--GugCGCg -5'
16323 3' -59.7 NC_004084.1 + 3349 0.66 0.529844
Target:  5'- -aCCGCCGAuuGGUCgUCGA-CGUGCGUc -3'
miRNA:   3'- gcGGCGGCU--CCAGgAGCUaGUGCGCG- -5'
16323 3' -59.7 NC_004084.1 + 5722 0.79 0.080284
Target:  5'- uCGCUcggGCCGAGGUCCUCGAUCGgGaugauCGCc -3'
miRNA:   3'- -GCGG---CGGCUCCAGGAGCUAGUgC-----GCG- -5'
16323 3' -59.7 NC_004084.1 + 5845 0.77 0.108261
Target:  5'- aCGCCGCCGcaGUCCUCGuggAUCuuCGCGCa -3'
miRNA:   3'- -GCGGCGGCucCAGGAGC---UAGu-GCGCG- -5'
16323 3' -59.7 NC_004084.1 + 6266 0.68 0.397073
Target:  5'- aCGUgGUCGGcGUCCaUGAUCACGaCGCa -3'
miRNA:   3'- -GCGgCGGCUcCAGGaGCUAGUGC-GCG- -5'
16323 3' -59.7 NC_004084.1 + 6971 0.7 0.339181
Target:  5'- aGCCGCCGcGGcCCUCccaacguaGAUCAgCGUGUc -3'
miRNA:   3'- gCGGCGGCuCCaGGAG--------CUAGU-GCGCG- -5'
16323 3' -59.7 NC_004084.1 + 7325 0.71 0.261094
Target:  5'- uCGCUGCuCGAGGaCUUCGAUCGCcCGg -3'
miRNA:   3'- -GCGGCG-GCUCCaGGAGCUAGUGcGCg -5'
16323 3' -59.7 NC_004084.1 + 11001 0.7 0.331427
Target:  5'- uGUCGCCGAcGUCCuUCGGcuucgUCGuCGCGCc -3'
miRNA:   3'- gCGGCGGCUcCAGG-AGCU-----AGU-GCGCG- -5'
16323 3' -59.7 NC_004084.1 + 12949 0.69 0.363223
Target:  5'- aCGCCGaaCGAGGcucggCUUCGAUcCGCGgGCg -3'
miRNA:   3'- -GCGGCg-GCUCCa----GGAGCUA-GUGCgCG- -5'
16323 3' -59.7 NC_004084.1 + 14258 0.68 0.442128
Target:  5'- uGUCGaCCgggaccaggugGAGGUCCUCGucGUCGCGaGCg -3'
miRNA:   3'- gCGGC-GG-----------CUCCAGGAGC--UAGUGCgCG- -5'
16323 3' -59.7 NC_004084.1 + 15405 0.68 0.405847
Target:  5'- gCGUcuCGuuGGGGaacUCCUCGAUCGCGuCGa -3'
miRNA:   3'- -GCG--GCggCUCC---AGGAGCUAGUGC-GCg -5'
16323 3' -59.7 NC_004084.1 + 16123 0.67 0.499786
Target:  5'- uCGUCGCCGAucgugaacgGGUgaCCgcggUGGUCGCGCuGCu -3'
miRNA:   3'- -GCGGCGGCU---------CCA--GGa---GCUAGUGCG-CG- -5'
16323 3' -59.7 NC_004084.1 + 16522 0.67 0.480173
Target:  5'- gCGUCGCCGcGGucgucguggaccUCCUCGcaguUCGCGCagGCg -3'
miRNA:   3'- -GCGGCGGCuCC------------AGGAGCu---AGUGCG--CG- -5'
16323 3' -59.7 NC_004084.1 + 16655 0.72 0.254772
Target:  5'- aCGUCGUCcggGAGGUCCUCG-UCGCcgGCGUc -3'
miRNA:   3'- -GCGGCGG---CUCCAGGAGCuAGUG--CGCG- -5'
16323 3' -59.7 NC_004084.1 + 18852 0.67 0.489934
Target:  5'- -uUCGUCGAcGGUCCcggucgagUCGAUCGCGCu- -3'
miRNA:   3'- gcGGCGGCU-CCAGG--------AGCUAGUGCGcg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.