miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16323 3' -59.7 NC_004084.1 + 22883 1.11 0.000328
Target:  5'- uCGCCGCCGAGGUCCUCGAUCACGCGCa -3'
miRNA:   3'- -GCGGCGGCUCCAGGAGCUAGUGCGCG- -5'
16323 3' -59.7 NC_004084.1 + 5722 0.79 0.080284
Target:  5'- uCGCUcggGCCGAGGUCCUCGAUCGgGaugauCGCc -3'
miRNA:   3'- -GCGG---CGGCUCCAGGAGCUAGUgC-----GCG- -5'
16323 3' -59.7 NC_004084.1 + 5845 0.77 0.108261
Target:  5'- aCGCCGCCGcaGUCCUCGuggAUCuuCGCGCa -3'
miRNA:   3'- -GCGGCGGCucCAGGAGC---UAGu-GCGCG- -5'
16323 3' -59.7 NC_004084.1 + 20025 0.76 0.137713
Target:  5'- gGCCGUaCGGuuGGUCCUCGGUCGCcuucccGCGCu -3'
miRNA:   3'- gCGGCG-GCU--CCAGGAGCUAGUG------CGCG- -5'
16323 3' -59.7 NC_004084.1 + 51412 0.75 0.161267
Target:  5'- aCGCCGUCGAGGcCUUCGAgggcgaCACGCu- -3'
miRNA:   3'- -GCGGCGGCUCCaGGAGCUa-----GUGCGcg -5'
16323 3' -59.7 NC_004084.1 + 26387 0.74 0.171667
Target:  5'- uCGUCGuaGAGGUCCUCGAacccgagcccuuccgUCGCGUGg -3'
miRNA:   3'- -GCGGCggCUCCAGGAGCU---------------AGUGCGCg -5'
16323 3' -59.7 NC_004084.1 + 1120 0.73 0.198288
Target:  5'- uCGUCGagGAGGUCCUgGAUgGCGCGg -3'
miRNA:   3'- -GCGGCggCUCCAGGAgCUAgUGCGCg -5'
16323 3' -59.7 NC_004084.1 + 29565 0.73 0.200321
Target:  5'- gGCCGuuGAGGgCCaucgccgggugggcgUCGuUCGCGCGCa -3'
miRNA:   3'- gCGGCggCUCCaGG---------------AGCuAGUGCGCG- -5'
16323 3' -59.7 NC_004084.1 + 16655 0.72 0.254772
Target:  5'- aCGUCGUCcggGAGGUCCUCG-UCGCcgGCGUc -3'
miRNA:   3'- -GCGGCGG---CUCCAGGAGCuAGUG--CGCG- -5'
16323 3' -59.7 NC_004084.1 + 39583 0.72 0.254772
Target:  5'- uCGUCGaCGAGGUCC-CGG--GCGCGCu -3'
miRNA:   3'- -GCGGCgGCUCCAGGaGCUagUGCGCG- -5'
16323 3' -59.7 NC_004084.1 + 7325 0.71 0.261094
Target:  5'- uCGCUGCuCGAGGaCUUCGAUCGCcCGg -3'
miRNA:   3'- -GCGGCG-GCUCCaGGAGCUAGUGcGCg -5'
16323 3' -59.7 NC_004084.1 + 394 0.71 0.29463
Target:  5'- uCGCCGCCGAugucgcagacGUCgUCGAUCugGaCGUc -3'
miRNA:   3'- -GCGGCGGCUc---------CAGgAGCUAGugC-GCG- -5'
16323 3' -59.7 NC_004084.1 + 44048 0.71 0.29463
Target:  5'- cCGCCGCCGuacagauGGugaUCCUCGc-CACGCGg -3'
miRNA:   3'- -GCGGCGGCu------CC---AGGAGCuaGUGCGCg -5'
16323 3' -59.7 NC_004084.1 + 35099 0.7 0.301727
Target:  5'- uGaCCGCUucuGGUacgcgcUCUCGGUCACGCGCu -3'
miRNA:   3'- gC-GGCGGcu-CCA------GGAGCUAGUGCGCG- -5'
16323 3' -59.7 NC_004084.1 + 50260 0.7 0.308955
Target:  5'- uCGCCGUuggcggCGAGGUCCUCGAcgucugccgacCAgGCGUc -3'
miRNA:   3'- -GCGGCG------GCUCCAGGAGCUa----------GUgCGCG- -5'
16323 3' -59.7 NC_004084.1 + 50021 0.7 0.316314
Target:  5'- uGUCGCCGAGcgggguGUCCcggUCGGUCAgCGUGUa -3'
miRNA:   3'- gCGGCGGCUC------CAGG---AGCUAGU-GCGCG- -5'
16323 3' -59.7 NC_004084.1 + 11001 0.7 0.331427
Target:  5'- uGUCGCCGAcGUCCuUCGGcuucgUCGuCGCGCc -3'
miRNA:   3'- gCGGCGGCUcCAGG-AGCU-----AGU-GCGCG- -5'
16323 3' -59.7 NC_004084.1 + 6971 0.7 0.339181
Target:  5'- aGCCGCCGcGGcCCUCccaacguaGAUCAgCGUGUc -3'
miRNA:   3'- gCGGCGGCuCCaGGAG--------CUAGU-GCGCG- -5'
16323 3' -59.7 NC_004084.1 + 27657 0.69 0.34627
Target:  5'- uGCCGCCGGGGauccgguUCCUCG-UCAUcuUGCu -3'
miRNA:   3'- gCGGCGGCUCC-------AGGAGCuAGUGc-GCG- -5'
16323 3' -59.7 NC_004084.1 + 39258 0.69 0.347065
Target:  5'- gGCgGCgGGaagaugguGGUCgUCGAUCGCGuCGCg -3'
miRNA:   3'- gCGgCGgCU--------CCAGgAGCUAGUGC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.