miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16332 5' -52.9 NC_004084.1 + 27932 0.67 0.840694
Target:  5'- uGAGaAGACGACUAcUCGGGuaacugGUCGg- -3'
miRNA:   3'- gCUC-UCUGCUGGU-AGCCCua----UAGCgg -5'
16332 5' -52.9 NC_004084.1 + 28922 0.72 0.581899
Target:  5'- cCGAGAGcgacguCGGCC-UCGGGAgcgCGUCg -3'
miRNA:   3'- -GCUCUCu-----GCUGGuAGCCCUauaGCGG- -5'
16332 5' -52.9 NC_004084.1 + 29063 0.66 0.88141
Target:  5'- -aGGccGCGACCGcccgcUCGGGGgcgucGUCGCCg -3'
miRNA:   3'- gcUCucUGCUGGU-----AGCCCUa----UAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 29388 0.67 0.840694
Target:  5'- aCGAGcaacggucGGGCGGCCAcuccUGGGGcGUCGCg -3'
miRNA:   3'- -GCUC--------UCUGCUGGUa---GCCCUaUAGCGg -5'
16332 5' -52.9 NC_004084.1 + 29587 0.68 0.784795
Target:  5'- cCGAGAcGGCGaACCgGUCGcGAUGcUCGCCc -3'
miRNA:   3'- -GCUCU-CUGC-UGG-UAGCcCUAU-AGCGG- -5'
16332 5' -52.9 NC_004084.1 + 31675 0.73 0.507294
Target:  5'- ----cGAUGGCCGUCGGGAaguUCGCUg -3'
miRNA:   3'- gcucuCUGCUGGUAGCCCUau-AGCGG- -5'
16332 5' -52.9 NC_004084.1 + 33006 0.66 0.86584
Target:  5'- uCGGGAuGCGG--AUCGGGGagAUCGCCc -3'
miRNA:   3'- -GCUCUcUGCUggUAGCCCUa-UAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 33219 0.67 0.840694
Target:  5'- -cAGAGGCGGCCGagCGGGccGUCcCCu -3'
miRNA:   3'- gcUCUCUGCUGGUa-GCCCuaUAGcGG- -5'
16332 5' -52.9 NC_004084.1 + 34607 0.67 0.826469
Target:  5'- -uGGAGACGcucaccgcguccauuGCCGUCuGGGA-GUCGCUc -3'
miRNA:   3'- gcUCUCUGC---------------UGGUAG-CCCUaUAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 34681 0.71 0.591694
Target:  5'- uGAGAGGCGucACUGUgucgcgcUGGGGUGUCGUCc -3'
miRNA:   3'- gCUCUCUGC--UGGUA-------GCCCUAUAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 34726 0.73 0.52193
Target:  5'- uGGGAGACGcucaccgcguccauuGCCGUCuGGGA-GUCGCUc -3'
miRNA:   3'- gCUCUCUGC---------------UGGUAG-CCCUaUAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 35691 0.66 0.88141
Target:  5'- cCGcuGGGCGGacuUCGUCGGGucgcUCGCCg -3'
miRNA:   3'- -GCucUCUGCU---GGUAGCCCuau-AGCGG- -5'
16332 5' -52.9 NC_004084.1 + 35901 0.69 0.712614
Target:  5'- -cGGAGGCGAUCGUCGucgaGGAUGaCGCg -3'
miRNA:   3'- gcUCUCUGCUGGUAGC----CCUAUaGCGg -5'
16332 5' -52.9 NC_004084.1 + 37862 0.73 0.507294
Target:  5'- uCGAacGGGAUGGCCGggCGGGugucggAUCGCCu -3'
miRNA:   3'- -GCU--CUCUGCUGGUa-GCCCua----UAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 38387 0.66 0.88141
Target:  5'- aCGAGAcGCGAUCGUCGuccucGAg--CGCCg -3'
miRNA:   3'- -GCUCUcUGCUGGUAGCc----CUauaGCGG- -5'
16332 5' -52.9 NC_004084.1 + 40168 0.68 0.80417
Target:  5'- uCGA-AGACG-UCAUCGGGAUG--GCCa -3'
miRNA:   3'- -GCUcUCUGCuGGUAGCCCUAUagCGG- -5'
16332 5' -52.9 NC_004084.1 + 41084 0.72 0.528253
Target:  5'- uCGAcGAGACGAUg--CGGGccGUCGCCg -3'
miRNA:   3'- -GCU-CUCUGCUGguaGCCCuaUAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 41623 0.68 0.764791
Target:  5'- aCGcGAGGCGACgGUCcGGGAcAUCGaCg -3'
miRNA:   3'- -GCuCUCUGCUGgUAG-CCCUaUAGCgG- -5'
16332 5' -52.9 NC_004084.1 + 41739 0.68 0.774866
Target:  5'- ---cGGAUGACgAUCGGGAcgaCGCCg -3'
miRNA:   3'- gcucUCUGCUGgUAGCCCUauaGCGG- -5'
16332 5' -52.9 NC_004084.1 + 41890 0.67 0.831866
Target:  5'- gCGAGGagguccacGACGACCG-CGGcGcgcgAUCGCCu -3'
miRNA:   3'- -GCUCU--------CUGCUGGUaGCC-Cua--UAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.