miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16332 5' -52.9 NC_004084.1 + 205 0.75 0.399504
Target:  5'- cCGGGAGcccgcACGGCCAUCGGcGGgggaGUCGUCg -3'
miRNA:   3'- -GCUCUC-----UGCUGGUAGCC-CUa---UAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 635 0.7 0.669387
Target:  5'- uGGGGGACGACgAgaaGGAcAUCGCCc -3'
miRNA:   3'- gCUCUCUGCUGgUagcCCUaUAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 867 0.67 0.82283
Target:  5'- aGAGucagucgucGACGucGCCGUCGGaaucGGUAUCGCUg -3'
miRNA:   3'- gCUCu--------CUGC--UGGUAGCC----CUAUAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 1548 0.69 0.712614
Target:  5'- cCGAGGcGACGGCCGUCGagccGGAgccCGCg -3'
miRNA:   3'- -GCUCU-CUGCUGGUAGC----CCUauaGCGg -5'
16332 5' -52.9 NC_004084.1 + 4960 0.67 0.840694
Target:  5'- cCGGGAGACGAcgacCCA-CGaGGAgAUCGgCg -3'
miRNA:   3'- -GCUCUCUGCU----GGUaGC-CCUaUAGCgG- -5'
16332 5' -52.9 NC_004084.1 + 5015 0.66 0.888817
Target:  5'- cCGAGAGGgGAUCAaCGGGcugAUCGa- -3'
miRNA:   3'- -GCUCUCUgCUGGUaGCCCua-UAGCgg -5'
16332 5' -52.9 NC_004084.1 + 5713 0.7 0.669387
Target:  5'- uCGAG-GACGucgcucggGCCGagguccucgaUCGGGAUgAUCGCCu -3'
miRNA:   3'- -GCUCuCUGC--------UGGU----------AGCCCUA-UAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 5882 0.66 0.857689
Target:  5'- gGAGcAGACcGCCA-CGGGG-AUCGUCc -3'
miRNA:   3'- gCUC-UCUGcUGGUaGCCCUaUAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 8377 0.7 0.654091
Target:  5'- uGAGGGACGAgCAUCuucgacuuucgucGGAUGUUGCUc -3'
miRNA:   3'- gCUCUCUGCUgGUAGc------------CCUAUAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 8729 0.68 0.784795
Target:  5'- ----cGGCGucACCcUCGuGGAUGUCGCCg -3'
miRNA:   3'- gcucuCUGC--UGGuAGC-CCUAUAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 9553 0.67 0.849305
Target:  5'- uGGGAGuACGGCUA-CGaGGAgguaccggaGUCGCCg -3'
miRNA:   3'- gCUCUC-UGCUGGUaGC-CCUa--------UAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 9937 0.68 0.802263
Target:  5'- aGuGAGACGugCGUCGGcGGgucggaguaGCCa -3'
miRNA:   3'- gCuCUCUGCugGUAGCC-CUauag-----CGG- -5'
16332 5' -52.9 NC_004084.1 + 11054 0.68 0.80417
Target:  5'- uGGGAGACGcagaACCAgccGGAacuggGUCGCCa -3'
miRNA:   3'- gCUCUCUGC----UGGUagcCCUa----UAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 16482 1.13 0.001239
Target:  5'- uCGAGAGACGACCAUCGGGAUAUCGCCa -3'
miRNA:   3'- -GCUCUCUGCUGGUAGCCCUAUAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 17049 0.68 0.763776
Target:  5'- uCGAGAguucguaaucgucGACGACgAUUucGGAUAUCGCUg -3'
miRNA:   3'- -GCUCU-------------CUGCUGgUAGc-CCUAUAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 18557 0.69 0.744247
Target:  5'- --cGGGugGGCCGaCGGGGagAUCGCg -3'
miRNA:   3'- gcuCUCugCUGGUaGCCCUa-UAGCGg -5'
16332 5' -52.9 NC_004084.1 + 21075 0.75 0.399504
Target:  5'- uCGAGcuGGGCG-UCGUCGGGA--UCGCCg -3'
miRNA:   3'- -GCUC--UCUGCuGGUAGCCCUauAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 22336 0.67 0.813594
Target:  5'- gGAGAcGGCGACCucGUCGcGGuccUCGUCg -3'
miRNA:   3'- gCUCU-CUGCUGG--UAGC-CCuauAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 26171 0.66 0.88141
Target:  5'- uCGAcGAGAacguagucccaaCGACCGUCGGc--GUCGUCg -3'
miRNA:   3'- -GCU-CUCU------------GCUGGUAGCCcuaUAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 26756 0.66 0.857689
Target:  5'- ----cGACGGCCAUCGaGAgGUCGCg -3'
miRNA:   3'- gcucuCUGCUGGUAGCcCUaUAGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.