miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16332 5' -52.9 NC_004084.1 + 29063 0.66 0.88141
Target:  5'- -aGGccGCGACCGcccgcUCGGGGgcgucGUCGCCg -3'
miRNA:   3'- gcUCucUGCUGGU-----AGCCCUa----UAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 47504 0.67 0.831866
Target:  5'- gCGaAGAcGACGAacuccCCgAUCGGGAguacccgacgAUCGCCa -3'
miRNA:   3'- -GC-UCU-CUGCU-----GG-UAGCCCUa---------UAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 41890 0.67 0.831866
Target:  5'- gCGAGGagguccacGACGACCG-CGGcGcgcgAUCGCCu -3'
miRNA:   3'- -GCUCU--------CUGCUGGUaGCC-Cua--UAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 27932 0.67 0.840694
Target:  5'- uGAGaAGACGACUAcUCGGGuaacugGUCGg- -3'
miRNA:   3'- gCUC-UCUGCUGGU-AGCCCua----UAGCgg -5'
16332 5' -52.9 NC_004084.1 + 44220 0.67 0.840694
Target:  5'- aCGAGcGGAUGGCCGacggcUGGGAgcUCGUCu -3'
miRNA:   3'- -GCUC-UCUGCUGGUa----GCCCUauAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 9553 0.67 0.849305
Target:  5'- uGGGAGuACGGCUA-CGaGGAgguaccggaGUCGCCg -3'
miRNA:   3'- gCUCUC-UGCUGGUaGC-CCUa--------UAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 5882 0.66 0.857689
Target:  5'- gGAGcAGACcGCCA-CGGGG-AUCGUCc -3'
miRNA:   3'- gCUC-UCUGcUGGUaGCCCUaUAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 26756 0.66 0.857689
Target:  5'- ----cGACGGCCAUCGaGAgGUCGCg -3'
miRNA:   3'- gcucuCUGCUGGUAGCcCUaUAGCGg -5'
16332 5' -52.9 NC_004084.1 + 50790 0.66 0.857689
Target:  5'- cCGAcGAGACGaACC--CGGGA-AUCGUCc -3'
miRNA:   3'- -GCU-CUCUGC-UGGuaGCCCUaUAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 40168 0.68 0.80417
Target:  5'- uCGA-AGACG-UCAUCGGGAUG--GCCa -3'
miRNA:   3'- -GCUcUCUGCuGGUAGCCCUAUagCGG- -5'
16332 5' -52.9 NC_004084.1 + 11054 0.68 0.80417
Target:  5'- uGGGAGACGcagaACCAgccGGAacuggGUCGCCa -3'
miRNA:   3'- gCUCUCUGC----UGGUagcCCUa----UAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 53125 0.68 0.774866
Target:  5'- cCGAGuggauGGCgGACCAUccgcugCGGGAcGUCGUCg -3'
miRNA:   3'- -GCUCu----CUG-CUGGUA------GCCCUaUAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 42312 0.72 0.560262
Target:  5'- gCGAcGAucgcGACGACCGUCGGGAcgagAUCGaCg -3'
miRNA:   3'- -GCU-CU----CUGCUGGUAGCCCUa---UAGCgG- -5'
16332 5' -52.9 NC_004084.1 + 28922 0.72 0.581899
Target:  5'- cCGAGAGcgacguCGGCC-UCGGGAgcgCGUCg -3'
miRNA:   3'- -GCUCUCu-----GCUGGuAGCCCUauaGCGG- -5'
16332 5' -52.9 NC_004084.1 + 34681 0.71 0.591694
Target:  5'- uGAGAGGCGucACUGUgucgcgcUGGGGUGUCGUCc -3'
miRNA:   3'- gCUCUCUGC--UGGUA-------GCCCUAUAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 635 0.7 0.669387
Target:  5'- uGGGGGACGACgAgaaGGAcAUCGCCc -3'
miRNA:   3'- gCUCUCUGCUGgUagcCCUaUAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 46998 0.7 0.680273
Target:  5'- --cGAGACGACCGcgaguuccUCGaGGAcGUCGCg -3'
miRNA:   3'- gcuCUCUGCUGGU--------AGC-CCUaUAGCGg -5'
16332 5' -52.9 NC_004084.1 + 18557 0.69 0.744247
Target:  5'- --cGGGugGGCCGaCGGGGagAUCGCg -3'
miRNA:   3'- gcuCUCugCUGGUaGCCCUa-UAGCGg -5'
16332 5' -52.9 NC_004084.1 + 41623 0.68 0.764791
Target:  5'- aCGcGAGGCGACgGUCcGGGAcAUCGaCg -3'
miRNA:   3'- -GCuCUCUGCUGgUAG-CCCUaUAGCgG- -5'
16332 5' -52.9 NC_004084.1 + 41739 0.68 0.774866
Target:  5'- ---cGGAUGACgAUCGGGAcgaCGCCg -3'
miRNA:   3'- gcucUCUGCUGgUAGCCCUauaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.