miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16332 5' -52.9 NC_004084.1 + 16482 1.13 0.001239
Target:  5'- uCGAGAGACGACCAUCGGGAUAUCGCCa -3'
miRNA:   3'- -GCUCUCUGCUGGUAGCCCUAUAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 205 0.75 0.399504
Target:  5'- cCGGGAGcccgcACGGCCAUCGGcGGgggaGUCGUCg -3'
miRNA:   3'- -GCUCUC-----UGCUGGUAGCC-CUa---UAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 21075 0.75 0.399504
Target:  5'- uCGAGcuGGGCG-UCGUCGGGA--UCGCCg -3'
miRNA:   3'- -GCUC--UCUGCuGGUAGCCCUauAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 31675 0.73 0.507294
Target:  5'- ----cGAUGGCCGUCGGGAaguUCGCUg -3'
miRNA:   3'- gcucuCUGCUGGUAGCCCUau-AGCGG- -5'
16332 5' -52.9 NC_004084.1 + 37862 0.73 0.507294
Target:  5'- uCGAacGGGAUGGCCGggCGGGugucggAUCGCCu -3'
miRNA:   3'- -GCU--CUCUGCUGGUa-GCCCua----UAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 34726 0.73 0.52193
Target:  5'- uGGGAGACGcucaccgcguccauuGCCGUCuGGGA-GUCGCUc -3'
miRNA:   3'- gCUCUCUGC---------------UGGUAG-CCCUaUAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 41084 0.72 0.528253
Target:  5'- uCGAcGAGACGAUg--CGGGccGUCGCCg -3'
miRNA:   3'- -GCU-CUCUGCUGguaGCCCuaUAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 42312 0.72 0.560262
Target:  5'- gCGAcGAucgcGACGACCGUCGGGAcgagAUCGaCg -3'
miRNA:   3'- -GCU-CU----CUGCUGGUAGCCCUa---UAGCgG- -5'
16332 5' -52.9 NC_004084.1 + 28922 0.72 0.581899
Target:  5'- cCGAGAGcgacguCGGCC-UCGGGAgcgCGUCg -3'
miRNA:   3'- -GCUCUCu-----GCUGGuAGCCCUauaGCGG- -5'
16332 5' -52.9 NC_004084.1 + 34681 0.71 0.591694
Target:  5'- uGAGAGGCGucACUGUgucgcgcUGGGGUGUCGUCc -3'
miRNA:   3'- gCUCUCUGC--UGGUA-------GCCCUAUAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 44671 0.71 0.592784
Target:  5'- ---cGGACGAUacuuguUCGGGAUAUCGUCg -3'
miRNA:   3'- gcucUCUGCUGgu----AGCCCUAUAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 55376 0.71 0.636563
Target:  5'- uCGAGGGugGCGAUCAUCGccGUAUuCGCCa -3'
miRNA:   3'- -GCUCUC--UGCUGGUAGCccUAUA-GCGG- -5'
16332 5' -52.9 NC_004084.1 + 8377 0.7 0.654091
Target:  5'- uGAGGGACGAgCAUCuucgacuuucgucGGAUGUUGCUc -3'
miRNA:   3'- gCUCUCUGCUgGUAGc------------CCUAUAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 5713 0.7 0.669387
Target:  5'- uCGAG-GACGucgcucggGCCGagguccucgaUCGGGAUgAUCGCCu -3'
miRNA:   3'- -GCUCuCUGC--------UGGU----------AGCCCUA-UAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 635 0.7 0.669387
Target:  5'- uGGGGGACGACgAgaaGGAcAUCGCCc -3'
miRNA:   3'- gCUCUCUGCUGgUagcCCUaUAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 46998 0.7 0.680273
Target:  5'- --cGAGACGACCGcgaguuccUCGaGGAcGUCGCg -3'
miRNA:   3'- gcuCUCUGCUGGU--------AGC-CCUaUAGCGg -5'
16332 5' -52.9 NC_004084.1 + 1548 0.69 0.712614
Target:  5'- cCGAGGcGACGGCCGUCGagccGGAgccCGCg -3'
miRNA:   3'- -GCUCU-CUGCUGGUAGC----CCUauaGCGg -5'
16332 5' -52.9 NC_004084.1 + 35901 0.69 0.712614
Target:  5'- -cGGAGGCGAUCGUCGucgaGGAUGaCGCg -3'
miRNA:   3'- gcUCUCUGCUGGUAGC----CCUAUaGCGg -5'
16332 5' -52.9 NC_004084.1 + 18557 0.69 0.744247
Target:  5'- --cGGGugGGCCGaCGGGGagAUCGCg -3'
miRNA:   3'- gcuCUCugCUGGUaGCCCUa-UAGCGg -5'
16332 5' -52.9 NC_004084.1 + 17049 0.68 0.763776
Target:  5'- uCGAGAguucguaaucgucGACGACgAUUucGGAUAUCGCUg -3'
miRNA:   3'- -GCUCU-------------CUGCUGgUAGc-CCUAUAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.