Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16346 | 3' | -51.7 | NC_004084.1 | + | 3 | 0.66 | 0.922343 |
Target: 5'- uGGUGAGUcgggggucuUCGAaGUCGAGgUCGUg- -3' miRNA: 3'- cCUACUCA---------AGCUgCAGCUCgAGCAgc -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 986 | 0.72 | 0.657959 |
Target: 5'- --cUGAGUUCGAgGuguuguccaccUCGAGCUCGcCGg -3' miRNA: 3'- ccuACUCAAGCUgC-----------AGCUCGAGCaGC- -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 1645 | 0.66 | 0.916266 |
Target: 5'- uGGcggGAGUacUCGcuCGUCaucauGGGCUCGUCGg -3' miRNA: 3'- -CCua-CUCA--AGCu-GCAG-----CUCGAGCAGC- -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 1657 | 0.66 | 0.922343 |
Target: 5'- gGGGUGcucGUUcccCGACGUCGAguGCUUGUgGa -3' miRNA: 3'- -CCUACu--CAA---GCUGCAGCU--CGAGCAgC- -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 1971 | 0.67 | 0.903287 |
Target: 5'- ---aGAGcgCGcCGUCGAGaUCGUCGu -3' miRNA: 3'- ccuaCUCaaGCuGCAGCUCgAGCAGC- -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 4574 | 0.77 | 0.362622 |
Target: 5'- gGGAUGAGUUCGGauUCGAGC-CGUUc -3' miRNA: 3'- -CCUACUCAAGCUgcAGCUCGaGCAGc -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 8236 | 0.67 | 0.889228 |
Target: 5'- ---aGAGggCGACGUCGAGacgaUCGaCGc -3' miRNA: 3'- ccuaCUCaaGCUGCAGCUCg---AGCaGC- -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 10378 | 1.12 | 0.002185 |
Target: 5'- cGGAUGAGUUCGACGUCGAGCUCGUCGu -3' miRNA: 3'- -CCUACUCAAGCUGCAGCUCGAGCAGC- -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 16928 | 0.7 | 0.733628 |
Target: 5'- cGGGUGcGGUUCGGCaUCG-GCgggCGUCGc -3' miRNA: 3'- -CCUAC-UCAAGCUGcAGCuCGa--GCAGC- -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 17785 | 0.68 | 0.846174 |
Target: 5'- aGGUGAGUUCGGCGUCucacuaccgCGUCa -3' miRNA: 3'- cCUACUCAAGCUGCAGcucga----GCAGc -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 17840 | 0.68 | 0.840963 |
Target: 5'- ---cGAGUUCGAUGgUGAcCUCGUCGc -3' miRNA: 3'- ccuaCUCAAGCUGCaGCUcGAGCAGC- -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 18767 | 0.66 | 0.928144 |
Target: 5'- uGGAgcgcgcGAGUuccUCGGCGUCGcGUacgaucgacUCGUCGa -3' miRNA: 3'- -CCUa-----CUCA---AGCUGCAGCuCG---------AGCAGC- -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 19010 | 0.67 | 0.881804 |
Target: 5'- -aGUGAGgacgaCGACGcCGAGCUCGa-- -3' miRNA: 3'- ccUACUCaa---GCUGCaGCUCGAGCagc -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 19595 | 0.68 | 0.832103 |
Target: 5'- aGGAcgacGAGUUCGugGUCaAGCacgaGUCGg -3' miRNA: 3'- -CCUa---CUCAAGCugCAGcUCGag--CAGC- -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 20107 | 0.68 | 0.866191 |
Target: 5'- ---cGAuaUCGACGUCacGCUCGUCGa -3' miRNA: 3'- ccuaCUcaAGCUGCAGcuCGAGCAGC- -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 21250 | 0.72 | 0.646967 |
Target: 5'- cGAUGAugUCGaACGcccCGAGCUCGUCGc -3' miRNA: 3'- cCUACUcaAGC-UGCa--GCUCGAGCAGC- -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 21597 | 0.68 | 0.832103 |
Target: 5'- -----cGUUCGAucggcguuCGUCGAcGCUCGUCGa -3' miRNA: 3'- ccuacuCAAGCU--------GCAGCU-CGAGCAGC- -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 21925 | 0.8 | 0.256379 |
Target: 5'- ---cGAGUUCGACGUCGAGgaaaUUGUCGg -3' miRNA: 3'- ccuaCUCAAGCUGCAGCUCg---AGCAGC- -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 22086 | 0.68 | 0.832103 |
Target: 5'- uGGUGAGUUCGACGaagucgucaCGGGCaUCGaUCa -3' miRNA: 3'- cCUACUCAAGCUGCa--------GCUCG-AGC-AGc -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 22831 | 0.69 | 0.794658 |
Target: 5'- cGGGUGAGgcguucgUCGACGgccUCGugauGCUCGaCGa -3' miRNA: 3'- -CCUACUCa------AGCUGC---AGCu---CGAGCaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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