Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16346 | 3' | -51.7 | NC_004084.1 | + | 10378 | 1.12 | 0.002185 |
Target: 5'- cGGAUGAGUUCGACGUCGAGCUCGUCGu -3' miRNA: 3'- -CCUACUCAAGCUGCAGCUCGAGCAGC- -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 21925 | 0.8 | 0.256379 |
Target: 5'- ---cGAGUUCGACGUCGAGgaaaUUGUCGg -3' miRNA: 3'- ccuaCUCAAGCUGCAGCUCg---AGCAGC- -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 4574 | 0.77 | 0.362622 |
Target: 5'- gGGAUGAGUUCGGauUCGAGC-CGUUc -3' miRNA: 3'- -CCUACUCAAGCUgcAGCUCGaGCAGc -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 42391 | 0.75 | 0.455307 |
Target: 5'- cGGAcagauUGAGUUCGuCuUUGAGCUCGUUGa -3' miRNA: 3'- -CCU-----ACUCAAGCuGcAGCUCGAGCAGC- -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 53043 | 0.75 | 0.485523 |
Target: 5'- uGGAcGcccaGGUUCGACGUCGAGaUCGUCc -3' miRNA: 3'- -CCUaC----UCAAGCUGCAGCUCgAGCAGc -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 30923 | 0.74 | 0.516661 |
Target: 5'- uGGAaGAcGUcgaucgcucgUCGACGUCGAGCUCGagGa -3' miRNA: 3'- -CCUaCU-CA----------AGCUGCAGCUCGAGCagC- -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 33253 | 0.73 | 0.559348 |
Target: 5'- cGAUGAG---GACGUCGAGgaCGUCGu -3' miRNA: 3'- cCUACUCaagCUGCAGCUCgaGCAGC- -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 32374 | 0.73 | 0.559348 |
Target: 5'- cGGUGAGa-CGACGaUCGAGCUCGggcUCGa -3' miRNA: 3'- cCUACUCaaGCUGC-AGCUCGAGC---AGC- -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 21250 | 0.72 | 0.646967 |
Target: 5'- cGAUGAugUCGaACGcccCGAGCUCGUCGc -3' miRNA: 3'- cCUACUcaAGC-UGCa--GCUCGAGCAGC- -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 27459 | 0.72 | 0.657959 |
Target: 5'- cGGAgcggGAGacggUCGGCGuccUCGAGCUCGacgUCGa -3' miRNA: 3'- -CCUa---CUCa---AGCUGC---AGCUCGAGC---AGC- -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 23185 | 0.72 | 0.657959 |
Target: 5'- ---aGAGguggUCGACGUCGAucGCgaUCGUCGg -3' miRNA: 3'- ccuaCUCa---AGCUGCAGCU--CG--AGCAGC- -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 986 | 0.72 | 0.657959 |
Target: 5'- --cUGAGUUCGAgGuguuguccaccUCGAGCUCGcCGg -3' miRNA: 3'- ccuACUCAAGCUgC-----------AGCUCGAGCaGC- -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 50595 | 0.71 | 0.701583 |
Target: 5'- cGGAucUGGGagCGugccuccaGCGUCGAGgUCGUCGa -3' miRNA: 3'- -CCU--ACUCaaGC--------UGCAGCUCgAGCAGC- -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 31341 | 0.7 | 0.733628 |
Target: 5'- cGGAgcAGUucgucgUCGACGUCGAGCaUCGcgCGa -3' miRNA: 3'- -CCUacUCA------AGCUGCAGCUCG-AGCa-GC- -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 16928 | 0.7 | 0.733628 |
Target: 5'- cGGGUGcGGUUCGGCaUCG-GCgggCGUCGc -3' miRNA: 3'- -CCUAC-UCAAGCUGcAGCuCGa--GCAGC- -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 56928 | 0.69 | 0.784846 |
Target: 5'- ---cGAGggCGACGUCuaccagGAGgUCGUCGa -3' miRNA: 3'- ccuaCUCaaGCUGCAG------CUCgAGCAGC- -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 44225 | 0.69 | 0.794658 |
Target: 5'- cGGAUGGc--CGACGgcuggGAGCUCGUCu -3' miRNA: 3'- -CCUACUcaaGCUGCag---CUCGAGCAGc -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 22831 | 0.69 | 0.794658 |
Target: 5'- cGGGUGAGgcguucgUCGACGgccUCGugauGCUCGaCGa -3' miRNA: 3'- -CCUACUCa------AGCUGC---AGCu---CGAGCaGC- -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 29744 | 0.69 | 0.8043 |
Target: 5'- ----cAGUgcUCGACGUUGAGCUCGcugCGg -3' miRNA: 3'- ccuacUCA--AGCUGCAGCUCGAGCa--GC- -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 49608 | 0.69 | 0.823033 |
Target: 5'- ---cGAGUUCGcCGUCGAcggagauCUCGUCGc -3' miRNA: 3'- ccuaCUCAAGCuGCAGCUc------GAGCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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