miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16346 3' -51.7 NC_004084.1 + 3 0.66 0.922343
Target:  5'- uGGUGAGUcgggggucuUCGAaGUCGAGgUCGUg- -3'
miRNA:   3'- cCUACUCA---------AGCUgCAGCUCgAGCAgc -5'
16346 3' -51.7 NC_004084.1 + 986 0.72 0.657959
Target:  5'- --cUGAGUUCGAgGuguuguccaccUCGAGCUCGcCGg -3'
miRNA:   3'- ccuACUCAAGCUgC-----------AGCUCGAGCaGC- -5'
16346 3' -51.7 NC_004084.1 + 1645 0.66 0.916266
Target:  5'- uGGcggGAGUacUCGcuCGUCaucauGGGCUCGUCGg -3'
miRNA:   3'- -CCua-CUCA--AGCu-GCAG-----CUCGAGCAGC- -5'
16346 3' -51.7 NC_004084.1 + 1657 0.66 0.922343
Target:  5'- gGGGUGcucGUUcccCGACGUCGAguGCUUGUgGa -3'
miRNA:   3'- -CCUACu--CAA---GCUGCAGCU--CGAGCAgC- -5'
16346 3' -51.7 NC_004084.1 + 1971 0.67 0.903287
Target:  5'- ---aGAGcgCGcCGUCGAGaUCGUCGu -3'
miRNA:   3'- ccuaCUCaaGCuGCAGCUCgAGCAGC- -5'
16346 3' -51.7 NC_004084.1 + 4574 0.77 0.362622
Target:  5'- gGGAUGAGUUCGGauUCGAGC-CGUUc -3'
miRNA:   3'- -CCUACUCAAGCUgcAGCUCGaGCAGc -5'
16346 3' -51.7 NC_004084.1 + 8236 0.67 0.889228
Target:  5'- ---aGAGggCGACGUCGAGacgaUCGaCGc -3'
miRNA:   3'- ccuaCUCaaGCUGCAGCUCg---AGCaGC- -5'
16346 3' -51.7 NC_004084.1 + 10378 1.12 0.002185
Target:  5'- cGGAUGAGUUCGACGUCGAGCUCGUCGu -3'
miRNA:   3'- -CCUACUCAAGCUGCAGCUCGAGCAGC- -5'
16346 3' -51.7 NC_004084.1 + 16928 0.7 0.733628
Target:  5'- cGGGUGcGGUUCGGCaUCG-GCgggCGUCGc -3'
miRNA:   3'- -CCUAC-UCAAGCUGcAGCuCGa--GCAGC- -5'
16346 3' -51.7 NC_004084.1 + 17785 0.68 0.846174
Target:  5'- aGGUGAGUUCGGCGUCucacuaccgCGUCa -3'
miRNA:   3'- cCUACUCAAGCUGCAGcucga----GCAGc -5'
16346 3' -51.7 NC_004084.1 + 17840 0.68 0.840963
Target:  5'- ---cGAGUUCGAUGgUGAcCUCGUCGc -3'
miRNA:   3'- ccuaCUCAAGCUGCaGCUcGAGCAGC- -5'
16346 3' -51.7 NC_004084.1 + 18767 0.66 0.928144
Target:  5'- uGGAgcgcgcGAGUuccUCGGCGUCGcGUacgaucgacUCGUCGa -3'
miRNA:   3'- -CCUa-----CUCA---AGCUGCAGCuCG---------AGCAGC- -5'
16346 3' -51.7 NC_004084.1 + 19010 0.67 0.881804
Target:  5'- -aGUGAGgacgaCGACGcCGAGCUCGa-- -3'
miRNA:   3'- ccUACUCaa---GCUGCaGCUCGAGCagc -5'
16346 3' -51.7 NC_004084.1 + 19595 0.68 0.832103
Target:  5'- aGGAcgacGAGUUCGugGUCaAGCacgaGUCGg -3'
miRNA:   3'- -CCUa---CUCAAGCugCAGcUCGag--CAGC- -5'
16346 3' -51.7 NC_004084.1 + 20107 0.68 0.866191
Target:  5'- ---cGAuaUCGACGUCacGCUCGUCGa -3'
miRNA:   3'- ccuaCUcaAGCUGCAGcuCGAGCAGC- -5'
16346 3' -51.7 NC_004084.1 + 21250 0.72 0.646967
Target:  5'- cGAUGAugUCGaACGcccCGAGCUCGUCGc -3'
miRNA:   3'- cCUACUcaAGC-UGCa--GCUCGAGCAGC- -5'
16346 3' -51.7 NC_004084.1 + 21597 0.68 0.832103
Target:  5'- -----cGUUCGAucggcguuCGUCGAcGCUCGUCGa -3'
miRNA:   3'- ccuacuCAAGCU--------GCAGCU-CGAGCAGC- -5'
16346 3' -51.7 NC_004084.1 + 21925 0.8 0.256379
Target:  5'- ---cGAGUUCGACGUCGAGgaaaUUGUCGg -3'
miRNA:   3'- ccuaCUCAAGCUGCAGCUCg---AGCAGC- -5'
16346 3' -51.7 NC_004084.1 + 22086 0.68 0.832103
Target:  5'- uGGUGAGUUCGACGaagucgucaCGGGCaUCGaUCa -3'
miRNA:   3'- cCUACUCAAGCUGCa--------GCUCG-AGC-AGc -5'
16346 3' -51.7 NC_004084.1 + 22831 0.69 0.794658
Target:  5'- cGGGUGAGgcguucgUCGACGgccUCGugauGCUCGaCGa -3'
miRNA:   3'- -CCUACUCa------AGCUGC---AGCu---CGAGCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.