miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16346 5' -55.1 NC_004084.1 + 11709 0.68 0.615333
Target:  5'- -cCGACCAcUCgUCGCGGUaGACGUCg- -3'
miRNA:   3'- caGCUGGU-AG-AGCGUCAgCUGCAGga -5'
16346 5' -55.1 NC_004084.1 + 18347 0.68 0.603348
Target:  5'- uUCGACCAUCccgacguUCGCggGGUCGACGgCUc -3'
miRNA:   3'- cAGCUGGUAG-------AGCG--UCAGCUGCaGGa -5'
16346 5' -55.1 NC_004084.1 + 36225 0.69 0.593564
Target:  5'- cGUUGugCucggagaaCUCGCcuaccgGGUCGACGUCCUc -3'
miRNA:   3'- -CAGCugGua------GAGCG------UCAGCUGCAGGA- -5'
16346 5' -55.1 NC_004084.1 + 49144 0.69 0.593564
Target:  5'- cUCGACCGUCUCuGUAG-CGGCGgcaauguacgucUCCa -3'
miRNA:   3'- cAGCUGGUAGAG-CGUCaGCUGC------------AGGa -5'
16346 5' -55.1 NC_004084.1 + 29070 0.69 0.592478
Target:  5'- cGUCGACCAg--CGCgAGUUcgagagcgcguggGACGUCCUc -3'
miRNA:   3'- -CAGCUGGUagaGCG-UCAG-------------CUGCAGGA- -5'
16346 5' -55.1 NC_004084.1 + 26265 0.69 0.590307
Target:  5'- cGUUGAUCAUCgUcucgugcgacgggaCGCAGUCGACcUCCUg -3'
miRNA:   3'- -CAGCUGGUAG-A--------------GCGUCAGCUGcAGGA- -5'
16346 5' -55.1 NC_004084.1 + 10989 0.69 0.56117
Target:  5'- aUCgGAUCGUCUUGUcGcCGACGUCCUu -3'
miRNA:   3'- cAG-CUGGUAGAGCGuCaGCUGCAGGA- -5'
16346 5' -55.1 NC_004084.1 + 882 0.7 0.529278
Target:  5'- cGUCG-CCGUCggaaucgguaUCGCuGUCGGCGUCg- -3'
miRNA:   3'- -CAGCuGGUAG----------AGCGuCAGCUGCAGga -5'
16346 5' -55.1 NC_004084.1 + 52565 0.67 0.68068
Target:  5'- cGUCGAUCGUCUUGaucgCGACGUgCUu -3'
miRNA:   3'- -CAGCUGGUAGAGCgucaGCUGCAgGA- -5'
16346 5' -55.1 NC_004084.1 + 51134 0.66 0.73397
Target:  5'- uGUCGuCCuugcucauggugAUCUCGguGUCGGugucgcucuCGUCCUg -3'
miRNA:   3'- -CAGCuGG------------UAGAGCguCAGCU---------GCAGGA- -5'
16346 5' -55.1 NC_004084.1 + 8915 0.66 0.764827
Target:  5'- -cCGACCGgaUCG-AGUCGACGUaCCg -3'
miRNA:   3'- caGCUGGUagAGCgUCAGCUGCA-GGa -5'
16346 5' -55.1 NC_004084.1 + 40581 0.66 0.764827
Target:  5'- cUCGGCCGUCUCG-AGcUCGGCuUCUc -3'
miRNA:   3'- cAGCUGGUAGAGCgUC-AGCUGcAGGa -5'
16346 5' -55.1 NC_004084.1 + 36154 0.66 0.75466
Target:  5'- cUCGACUggaUCGaC-GUCGACGUCCg -3'
miRNA:   3'- cAGCUGGuagAGC-GuCAGCUGCAGGa -5'
16346 5' -55.1 NC_004084.1 + 5160 0.66 0.75466
Target:  5'- -cCGGCCcgAUCUCGUcgccGUCGACGaCCg -3'
miRNA:   3'- caGCUGG--UAGAGCGu---CAGCUGCaGGa -5'
16346 5' -55.1 NC_004084.1 + 1416 0.66 0.75466
Target:  5'- cGUCG-CCAuUCUCgGC-GUCGcCGUCCUc -3'
miRNA:   3'- -CAGCuGGU-AGAG-CGuCAGCuGCAGGA- -5'
16346 5' -55.1 NC_004084.1 + 48405 0.66 0.753637
Target:  5'- aUCGuggccGCCAUCUCGgAgaucuucGUCGACGUCg- -3'
miRNA:   3'- cAGC-----UGGUAGAGCgU-------CAGCUGCAGga -5'
16346 5' -55.1 NC_004084.1 + 9237 0.66 0.744371
Target:  5'- cUCGAUCAgggcguccagcgUCUCGgGGUCGuCGUUCg -3'
miRNA:   3'- cAGCUGGU------------AGAGCgUCAGCuGCAGGa -5'
16346 5' -55.1 NC_004084.1 + 57105 0.66 0.744371
Target:  5'- --aGACCGcCUCGaucCAGUCGAggaCGUCCUc -3'
miRNA:   3'- cagCUGGUaGAGC---GUCAGCU---GCAGGA- -5'
16346 5' -55.1 NC_004084.1 + 18247 0.66 0.738143
Target:  5'- aGUUGGCCAUCcCGaugacgucuucgaacCGGUCGACGUUg- -3'
miRNA:   3'- -CAGCUGGUAGaGC---------------GUCAGCUGCAGga -5'
16346 5' -55.1 NC_004084.1 + 29768 0.66 0.73397
Target:  5'- -aUGACCGUCcugcaUCGCgacgGGUCGGCGUacaCCUa -3'
miRNA:   3'- caGCUGGUAG-----AGCG----UCAGCUGCA---GGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.