miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16346 5' -55.1 NC_004084.1 + 5488 0.75 0.259411
Target:  5'- -aCGGCCAgaUCgUCGCAGUCGACGagucguUCCUa -3'
miRNA:   3'- caGCUGGU--AG-AGCGUCAGCUGC------AGGA- -5'
16346 5' -55.1 NC_004084.1 + 19079 0.66 0.774859
Target:  5'- -gCGGCCGUCUac--GUCGACGUCg- -3'
miRNA:   3'- caGCUGGUAGAgcguCAGCUGCAGga -5'
16346 5' -55.1 NC_004084.1 + 48719 0.66 0.774859
Target:  5'- cGUCGGCCAaCUcacCGCGGUcucCGGCGggCCa -3'
miRNA:   3'- -CAGCUGGUaGA---GCGUCA---GCUGCa-GGa -5'
16346 5' -55.1 NC_004084.1 + 34930 0.66 0.774859
Target:  5'- -cCGGCCAUCUCGUcacgGGCGUUCg -3'
miRNA:   3'- caGCUGGUAGAGCGucagCUGCAGGa -5'
16346 5' -55.1 NC_004084.1 + 17257 0.66 0.774859
Target:  5'- -gCGGCCGg--UGCAGUCGGCGaugCCc -3'
miRNA:   3'- caGCUGGUagaGCGUCAGCUGCa--GGa -5'
16346 5' -55.1 NC_004084.1 + 27452 0.66 0.764827
Target:  5'- aUCGAuCCGgagCgggaGaCGGUCGGCGUCCUc -3'
miRNA:   3'- cAGCU-GGUa--Gag--C-GUCAGCUGCAGGA- -5'
16346 5' -55.1 NC_004084.1 + 16259 0.66 0.764827
Target:  5'- cUCGACgGUUcUGCAGUCGAgugcaGUCCc -3'
miRNA:   3'- cAGCUGgUAGaGCGUCAGCUg----CAGGa -5'
16346 5' -55.1 NC_004084.1 + 20444 0.66 0.744371
Target:  5'- aGUCGucaACCGUCUC--AGUCGGCGaCCg -3'
miRNA:   3'- -CAGC---UGGUAGAGcgUCAGCUGCaGGa -5'
16346 5' -55.1 NC_004084.1 + 32048 0.66 0.723469
Target:  5'- -aCGACgAUCccgaacgcgacUCGCuGuUCGACGUCCUc -3'
miRNA:   3'- caGCUGgUAG-----------AGCGuC-AGCUGCAGGA- -5'
16346 5' -55.1 NC_004084.1 + 21880 0.67 0.68068
Target:  5'- cGUCGAuaCCGUUgUCGCGaUCGGCGUCUc -3'
miRNA:   3'- -CAGCU--GGUAG-AGCGUcAGCUGCAGGa -5'
16346 5' -55.1 NC_004084.1 + 51226 0.71 0.438356
Target:  5'- cGUgGugCGUCgaGCAGcUCGACGUCCg -3'
miRNA:   3'- -CAgCugGUAGagCGUC-AGCUGCAGGa -5'
16346 5' -55.1 NC_004084.1 + 16393 0.71 0.44803
Target:  5'- uGUCGACCGcCUCGCucgCGACGgCCa -3'
miRNA:   3'- -CAGCUGGUaGAGCGucaGCUGCaGGa -5'
16346 5' -55.1 NC_004084.1 + 47255 0.68 0.608793
Target:  5'- -aCGACCggCUCGCcggcgccuacuacgaGGUCGAcgaCGUCCa -3'
miRNA:   3'- caGCUGGuaGAGCG---------------UCAGCU---GCAGGa -5'
16346 5' -55.1 NC_004084.1 + 12640 0.68 0.615333
Target:  5'- gGUCaACCA-CUCGCagaguacgaAGUUGACGUCCc -3'
miRNA:   3'- -CAGcUGGUaGAGCG---------UCAGCUGCAGGa -5'
16346 5' -55.1 NC_004084.1 + 49325 0.68 0.648072
Target:  5'- cGUCGACa---UCGCccGGUCGGCGUaCCg -3'
miRNA:   3'- -CAGCUGguagAGCG--UCAGCUGCA-GGa -5'
16346 5' -55.1 NC_004084.1 + 28757 0.67 0.669842
Target:  5'- aGUCgGGCCAuguaccagcugUCcgCGCGgucGUCGACGUCCg -3'
miRNA:   3'- -CAG-CUGGU-----------AGa-GCGU---CAGCUGCAGGa -5'
16346 5' -55.1 NC_004084.1 + 42650 0.67 0.68068
Target:  5'- aGUCGGCgg---CGCAGUCcgacGACGUCCUc -3'
miRNA:   3'- -CAGCUGguagaGCGUCAG----CUGCAGGA- -5'
16346 5' -55.1 NC_004084.1 + 10415 1.07 0.001618
Target:  5'- cGUCGACCAUCUCGCAGUCGACGUCCUc -3'
miRNA:   3'- -CAGCUGGUAGAGCGUCAGCUGCAGGA- -5'
16346 5' -55.1 NC_004084.1 + 8915 0.66 0.764827
Target:  5'- -cCGACCGgaUCG-AGUCGACGUaCCg -3'
miRNA:   3'- caGCUGGUagAGCgUCAGCUGCA-GGa -5'
16346 5' -55.1 NC_004084.1 + 40581 0.66 0.764827
Target:  5'- cUCGGCCGUCUCG-AGcUCGGCuUCUc -3'
miRNA:   3'- cAGCUGGUAGAGCgUC-AGCUGcAGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.