Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16346 | 5' | -55.1 | NC_004084.1 | + | 882 | 0.7 | 0.529278 |
Target: 5'- cGUCG-CCGUCggaaucgguaUCGCuGUCGGCGUCg- -3' miRNA: 3'- -CAGCuGGUAG----------AGCGuCAGCUGCAGga -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 957 | 0.8 | 0.126088 |
Target: 5'- gGUCGcggGCCAUCUCGCGGUCGGUGUCgCUg -3' miRNA: 3'- -CAGC---UGGUAGAGCGUCAGCUGCAG-GA- -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 1416 | 0.66 | 0.75466 |
Target: 5'- cGUCG-CCAuUCUCgGC-GUCGcCGUCCUc -3' miRNA: 3'- -CAGCuGGU-AGAG-CGuCAGCuGCAGGA- -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 5160 | 0.66 | 0.75466 |
Target: 5'- -cCGGCCcgAUCUCGUcgccGUCGACGaCCg -3' miRNA: 3'- caGCUGG--UAGAGCGu---CAGCUGCaGGa -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 5488 | 0.75 | 0.259411 |
Target: 5'- -aCGGCCAgaUCgUCGCAGUCGACGagucguUCCUa -3' miRNA: 3'- caGCUGGU--AG-AGCGUCAGCUGC------AGGA- -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 6250 | 0.7 | 0.498078 |
Target: 5'- aUCGAgcgguUCGUCgaCGUGGUCGGCGUCCa -3' miRNA: 3'- cAGCU-----GGUAGa-GCGUCAGCUGCAGGa -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 8915 | 0.66 | 0.764827 |
Target: 5'- -cCGACCGgaUCG-AGUCGACGUaCCg -3' miRNA: 3'- caGCUGGUagAGCgUCAGCUGCA-GGa -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 9237 | 0.66 | 0.744371 |
Target: 5'- cUCGAUCAgggcguccagcgUCUCGgGGUCGuCGUUCg -3' miRNA: 3'- cAGCUGGU------------AGAGCgUCAGCuGCAGGa -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 10242 | 0.74 | 0.309018 |
Target: 5'- gGUCG-CCuggugagUCGCGGUCGGCGUCCg -3' miRNA: 3'- -CAGCuGGuag----AGCGUCAGCUGCAGGa -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 10415 | 1.07 | 0.001618 |
Target: 5'- cGUCGACCAUCUCGCAGUCGACGUCCUc -3' miRNA: 3'- -CAGCUGGUAGAGCGUCAGCUGCAGGA- -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 10989 | 0.69 | 0.56117 |
Target: 5'- aUCgGAUCGUCUUGUcGcCGACGUCCUu -3' miRNA: 3'- cAG-CUGGUAGAGCGuCaGCUGCAGGA- -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 11709 | 0.68 | 0.615333 |
Target: 5'- -cCGACCAcUCgUCGCGGUaGACGUCg- -3' miRNA: 3'- caGCUGGU-AG-AGCGUCAgCUGCAGga -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 12640 | 0.68 | 0.615333 |
Target: 5'- gGUCaACCA-CUCGCagaguacgaAGUUGACGUCCc -3' miRNA: 3'- -CAGcUGGUaGAGCG---------UCAGCUGCAGGa -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 12759 | 0.74 | 0.309018 |
Target: 5'- -cCGACCGUCUCGUcguuGUCGGCaUCCg -3' miRNA: 3'- caGCUGGUAGAGCGu---CAGCUGcAGGa -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 14204 | 0.8 | 0.126088 |
Target: 5'- cGUCGGCCAUC-CGCucGUCGAgGUCCUc -3' miRNA: 3'- -CAGCUGGUAGaGCGu-CAGCUgCAGGA- -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 15669 | 0.74 | 0.32446 |
Target: 5'- -cCGACCAUCUC-CGGgcCGAUGUCCUu -3' miRNA: 3'- caGCUGGUAGAGcGUCa-GCUGCAGGA- -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 16259 | 0.66 | 0.764827 |
Target: 5'- cUCGACgGUUcUGCAGUCGAgugcaGUCCc -3' miRNA: 3'- cAGCUGgUAGaGCGUCAGCUg----CAGGa -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 16393 | 0.71 | 0.44803 |
Target: 5'- uGUCGACCGcCUCGCucgCGACGgCCa -3' miRNA: 3'- -CAGCUGGUaGAGCGucaGCUGCaGGa -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 16629 | 0.71 | 0.467726 |
Target: 5'- gGUCGAUCGUgacgccCUCGUcGUCGACGUCg- -3' miRNA: 3'- -CAGCUGGUA------GAGCGuCAGCUGCAGga -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 17257 | 0.66 | 0.774859 |
Target: 5'- -gCGGCCGg--UGCAGUCGGCGaugCCc -3' miRNA: 3'- caGCUGGUagaGCGUCAGCUGCa--GGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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