Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16353 | 3' | -56.2 | NC_004084.1 | + | 51058 | 0.66 | 0.704042 |
Target: 5'- cCGUCgGAGCGaaccgcgcCUCCUGGGacgacCGGGCg -3' miRNA: 3'- aGCGGgUUCGCau------GAGGAUCC-----GCUCG- -5' |
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16353 | 3' | -56.2 | NC_004084.1 | + | 13918 | 0.66 | 0.693324 |
Target: 5'- cCGCUUc-GCGgaACUCCUcgucaucguuuAGGCGAGCc -3' miRNA: 3'- aGCGGGuuCGCa-UGAGGA-----------UCCGCUCG- -5' |
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16353 | 3' | -56.2 | NC_004084.1 | + | 28793 | 0.66 | 0.693324 |
Target: 5'- aCGUCCgGAGCcgacagccagGUGCcgUUgUGGGCGAGCa -3' miRNA: 3'- aGCGGG-UUCG----------CAUG--AGgAUCCGCUCG- -5' |
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16353 | 3' | -56.2 | NC_004084.1 | + | 43949 | 0.66 | 0.671725 |
Target: 5'- aCGCUCAGGag-GCggCCUGGGaGGGCg -3' miRNA: 3'- aGCGGGUUCgcaUGa-GGAUCCgCUCG- -5' |
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16353 | 3' | -56.2 | NC_004084.1 | + | 12887 | 0.66 | 0.671725 |
Target: 5'- aCGCCgGAcGUGUcauaUCCU-GGCGAGUa -3' miRNA: 3'- aGCGGgUU-CGCAug--AGGAuCCGCUCG- -5' |
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16353 | 3' | -56.2 | NC_004084.1 | + | 29369 | 0.66 | 0.671725 |
Target: 5'- aCGCCCGGgaucccGCGUccCUCCUggaAGGUGAuGCc -3' miRNA: 3'- aGCGGGUU------CGCAu-GAGGA---UCCGCU-CG- -5' |
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16353 | 3' | -56.2 | NC_004084.1 | + | 55991 | 0.66 | 0.671725 |
Target: 5'- aUCGCCgauGGCGaGCaUCgCU-GGCGAGCc -3' miRNA: 3'- -AGCGGgu-UCGCaUG-AG-GAuCCGCUCG- -5' |
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16353 | 3' | -56.2 | NC_004084.1 | + | 47377 | 0.66 | 0.660865 |
Target: 5'- uUCGUCCGcgucgucgacGGCGaGCUCCaGGGCGcgacgacgaAGCc -3' miRNA: 3'- -AGCGGGU----------UCGCaUGAGGaUCCGC---------UCG- -5' |
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16353 | 3' | -56.2 | NC_004084.1 | + | 13103 | 0.66 | 0.660865 |
Target: 5'- gUCGUgCCGGGCGUAgUcgaCCUGGaguuGCGGGCc -3' miRNA: 3'- -AGCG-GGUUCGCAUgA---GGAUC----CGCUCG- -5' |
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16353 | 3' | -56.2 | NC_004084.1 | + | 49332 | 0.66 | 0.660865 |
Target: 5'- aUCGCCCGgucGGCGUA--CCgcGGCGAu- -3' miRNA: 3'- -AGCGGGU---UCGCAUgaGGauCCGCUcg -5' |
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16353 | 3' | -56.2 | NC_004084.1 | + | 26150 | 0.66 | 0.64889 |
Target: 5'- aCGCCCAGGU-------UGGGCGGGCa -3' miRNA: 3'- aGCGGGUUCGcaugaggAUCCGCUCG- -5' |
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16353 | 3' | -56.2 | NC_004084.1 | + | 54546 | 0.67 | 0.639077 |
Target: 5'- aUCGUCCGGcGCuGUAUcaCCgaGGGCGAGCu -3' miRNA: 3'- -AGCGGGUU-CG-CAUGa-GGa-UCCGCUCG- -5' |
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16353 | 3' | -56.2 | NC_004084.1 | + | 10182 | 0.67 | 0.617264 |
Target: 5'- aCGCUCAacgcGGCGggagACUUCUcAGGCGAucGCc -3' miRNA: 3'- aGCGGGU----UCGCa---UGAGGA-UCCGCU--CG- -5' |
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16353 | 3' | -56.2 | NC_004084.1 | + | 15885 | 0.67 | 0.606372 |
Target: 5'- gUCGaUCCGAGCGgcUUCCcgcaGCGGGCg -3' miRNA: 3'- -AGC-GGGUUCGCauGAGGauc-CGCUCG- -5' |
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16353 | 3' | -56.2 | NC_004084.1 | + | 52623 | 0.67 | 0.606372 |
Target: 5'- aCGCCC-GGCGUcggAUaCCaGGGUGAGUg -3' miRNA: 3'- aGCGGGuUCGCA---UGaGGaUCCGCUCG- -5' |
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16353 | 3' | -56.2 | NC_004084.1 | + | 29151 | 0.67 | 0.595502 |
Target: 5'- gCGCugCCGGGCGUACaaCCUGGuuCGAGCc -3' miRNA: 3'- aGCG--GGUUCGCAUGa-GGAUCc-GCUCG- -5' |
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16353 | 3' | -56.2 | NC_004084.1 | + | 43185 | 0.67 | 0.593331 |
Target: 5'- gUCGCCCGAGgagguggacgaugccCGgugagacgccgauCUCCUGGuGCGAGUc -3' miRNA: 3'- -AGCGGGUUC---------------GCau-----------GAGGAUC-CGCUCG- -5' |
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16353 | 3' | -56.2 | NC_004084.1 | + | 37559 | 0.68 | 0.552408 |
Target: 5'- aUCGCCgGcGCGgucgACgugccacCCUcGGCGAGCg -3' miRNA: 3'- -AGCGGgUuCGCa---UGa------GGAuCCGCUCG- -5' |
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16353 | 3' | -56.2 | NC_004084.1 | + | 13757 | 0.68 | 0.541771 |
Target: 5'- cUCGCCCucGAG-GUcGCg-CUGGGCGGGCu -3' miRNA: 3'- -AGCGGG--UUCgCA-UGagGAUCCGCUCG- -5' |
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16353 | 3' | -56.2 | NC_004084.1 | + | 29395 | 0.68 | 0.531203 |
Target: 5'- aCGgUCGGGCGgccACUCCUgGGGCGucGCg -3' miRNA: 3'- aGCgGGUUCGCa--UGAGGA-UCCGCu-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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