miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16353 5' -57.2 NC_004084.1 + 7327 1.06 0.001125
Target:  5'- gCUGCUCGAGGACUUCGAUCGCCCGGUc -3'
miRNA:   3'- -GACGAGCUCCUGAAGCUAGCGGGCCA- -5'
16353 5' -57.2 NC_004084.1 + 21478 0.78 0.12203
Target:  5'- --cCUCGAGGGCggCGAUCGCCuCGGUu -3'
miRNA:   3'- gacGAGCUCCUGaaGCUAGCGG-GCCA- -5'
16353 5' -57.2 NC_004084.1 + 29077 0.78 0.125423
Target:  5'- -cGCUCGGGGGCgUCG-UCGCCgCGGUa -3'
miRNA:   3'- gaCGAGCUCCUGaAGCuAGCGG-GCCA- -5'
16353 5' -57.2 NC_004084.1 + 45412 0.75 0.192843
Target:  5'- uUGCUCGAGGuCgUCGAUCGagCCGGa -3'
miRNA:   3'- gACGAGCUCCuGaAGCUAGCg-GGCCa -5'
16353 5' -57.2 NC_004084.1 + 35134 0.72 0.297193
Target:  5'- -cGCUCG-GGACUggUCGGcCGCUCGGUc -3'
miRNA:   3'- gaCGAGCuCCUGA--AGCUaGCGGGCCA- -5'
16353 5' -57.2 NC_004084.1 + 4946 0.71 0.344098
Target:  5'- -cGCUCGAGGACgaaaUCGAgcaguggcuccagagCGCCuCGGa -3'
miRNA:   3'- gaCGAGCUCCUGa---AGCUa--------------GCGG-GCCa -5'
16353 5' -57.2 NC_004084.1 + 20028 0.7 0.412381
Target:  5'- -cGCUCGAGGACgaCGAUCGCg---- -3'
miRNA:   3'- gaCGAGCUCCUGaaGCUAGCGggcca -5'
16353 5' -57.2 NC_004084.1 + 44799 0.69 0.45
Target:  5'- gCUGCcacggccagUCGAGGACUUCaccgauggGGUCGCUCGaGUu -3'
miRNA:   3'- -GACG---------AGCUCCUGAAG--------CUAGCGGGC-CA- -5'
16353 5' -57.2 NC_004084.1 + 29721 0.69 0.469504
Target:  5'- -cGUUCGAGGA----GAUCGUCCGGg -3'
miRNA:   3'- gaCGAGCUCCUgaagCUAGCGGGCCa -5'
16353 5' -57.2 NC_004084.1 + 10190 0.69 0.479417
Target:  5'- -cGCggCGGGaGACUUcucaggCGAUCGCCUGGa -3'
miRNA:   3'- gaCGa-GCUC-CUGAA------GCUAGCGGGCCa -5'
16353 5' -57.2 NC_004084.1 + 30952 0.69 0.479417
Target:  5'- -aGCUCGAGGACgcCGAccgucuccCGCuCCGGa -3'
miRNA:   3'- gaCGAGCUCCUGaaGCUa-------GCG-GGCCa -5'
16353 5' -57.2 NC_004084.1 + 10561 0.68 0.489432
Target:  5'- -aGCUCGGGGugGCUgUCGAUCgagacgggaccgGCCUGGUu -3'
miRNA:   3'- gaCGAGCUCC--UGA-AGCUAG------------CGGGCCA- -5'
16353 5' -57.2 NC_004084.1 + 5710 0.68 0.499543
Target:  5'- -aGUUCGAGGAC----GUCGCUCGGg -3'
miRNA:   3'- gaCGAGCUCCUGaagcUAGCGGGCCa -5'
16353 5' -57.2 NC_004084.1 + 7093 0.68 0.499543
Target:  5'- --uCUCGcGGGCgcacUCGAUCGCCuCGGUc -3'
miRNA:   3'- gacGAGCuCCUGa---AGCUAGCGG-GCCA- -5'
16353 5' -57.2 NC_004084.1 + 53268 0.68 0.520034
Target:  5'- gCUGcCUCaGGGACgacgUCGGUCGCCacgccgaGGUu -3'
miRNA:   3'- -GAC-GAGcUCCUGa---AGCUAGCGGg------CCA- -5'
16353 5' -57.2 NC_004084.1 + 29507 0.68 0.540848
Target:  5'- -aGCUUG-GGGCUccagccagccUCGAUCGCgcggCCGGUg -3'
miRNA:   3'- gaCGAGCuCCUGA----------AGCUAGCG----GGCCA- -5'
16353 5' -57.2 NC_004084.1 + 53412 0.67 0.55136
Target:  5'- aCUcCUCGAGGACcucgUCGAgauGCCCGaGUg -3'
miRNA:   3'- -GAcGAGCUCCUGa---AGCUag-CGGGC-CA- -5'
16353 5' -57.2 NC_004084.1 + 47573 0.67 0.55136
Target:  5'- -cGUUCGAGGACgUUCGcgaGCgCGGUg -3'
miRNA:   3'- gaCGAGCUCCUG-AAGCuagCGgGCCA- -5'
16353 5' -57.2 NC_004084.1 + 50124 0.67 0.561933
Target:  5'- ---gUCGAGGcCcgCGAUCGUCCGGa -3'
miRNA:   3'- gacgAGCUCCuGaaGCUAGCGGGCCa -5'
16353 5' -57.2 NC_004084.1 + 1255 0.67 0.582165
Target:  5'- -cGCUUGGcgaguucGGuCUgggUGAUCGCCCGGg -3'
miRNA:   3'- gaCGAGCU-------CCuGAa--GCUAGCGGGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.