miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16353 5' -57.2 NC_004084.1 + 29077 0.78 0.125423
Target:  5'- -cGCUCGGGGGCgUCG-UCGCCgCGGUa -3'
miRNA:   3'- gaCGAGCUCCUGaAGCuAGCGG-GCCA- -5'
16353 5' -57.2 NC_004084.1 + 56924 0.66 0.655349
Target:  5'- -aGCUCGAGGGCgacgUcuaccaggaggucgUCGAUCGCCgcaucagcgaagCGGUc -3'
miRNA:   3'- gaCGAGCUCCUG----A--------------AGCUAGCGG------------GCCA- -5'
16353 5' -57.2 NC_004084.1 + 28680 0.66 0.64781
Target:  5'- -cGC-CGGuGGucuCUcCGGUCGCCCGGa -3'
miRNA:   3'- gaCGaGCU-CCu--GAaGCUAGCGGGCCa -5'
16353 5' -57.2 NC_004084.1 + 19029 0.66 0.64781
Target:  5'- -aGCUCGAacuGGACUUCGAaaccaugcUCGaCCCucGGa -3'
miRNA:   3'- gaCGAGCU---CCUGAAGCU--------AGC-GGG--CCa -5'
16353 5' -57.2 NC_004084.1 + 47015 0.66 0.641342
Target:  5'- --cCUCGAGGACgucgcgaUCGAUgacgaugccggggagUGCCCGGa -3'
miRNA:   3'- gacGAGCUCCUGa------AGCUA---------------GCGGGCCa -5'
16353 5' -57.2 NC_004084.1 + 49321 0.66 0.626242
Target:  5'- -aGCUCGucGAC----AUCGCCCGGUc -3'
miRNA:   3'- gaCGAGCucCUGaagcUAGCGGGCCA- -5'
16353 5' -57.2 NC_004084.1 + 29231 0.66 0.626242
Target:  5'- uUGUUCGcGGGCgaguacUCGucgCGCCCGGc -3'
miRNA:   3'- gACGAGCuCCUGa-----AGCua-GCGGGCCa -5'
16353 5' -57.2 NC_004084.1 + 52247 0.66 0.61546
Target:  5'- -aGCUCGAGGuccacCUggagccCGAUCGCCaGGa -3'
miRNA:   3'- gaCGAGCUCCu----GAa-----GCUAGCGGgCCa -5'
16353 5' -57.2 NC_004084.1 + 47487 0.66 0.612228
Target:  5'- gCUGUUCGAGGugUUCGGcgaagacgacgaacUC-CCCGa- -3'
miRNA:   3'- -GACGAGCUCCugAAGCU--------------AGcGGGCca -5'
16353 5' -57.2 NC_004084.1 + 22173 0.66 0.604693
Target:  5'- --aCUCGAGGACgUCGA---CCCGGUa -3'
miRNA:   3'- gacGAGCUCCUGaAGCUagcGGGCCA- -5'
16353 5' -57.2 NC_004084.1 + 35134 0.72 0.297193
Target:  5'- -cGCUCG-GGACUggUCGGcCGCUCGGUc -3'
miRNA:   3'- gaCGAGCuCCUGA--AGCUaGCGGGCCA- -5'
16353 5' -57.2 NC_004084.1 + 4946 0.71 0.344098
Target:  5'- -cGCUCGAGGACgaaaUCGAgcaguggcuccagagCGCCuCGGa -3'
miRNA:   3'- gaCGAGCUCCUGa---AGCUa--------------GCGG-GCCa -5'
16353 5' -57.2 NC_004084.1 + 20028 0.7 0.412381
Target:  5'- -cGCUCGAGGACgaCGAUCGCg---- -3'
miRNA:   3'- gaCGAGCUCCUGaaGCUAGCGggcca -5'
16353 5' -57.2 NC_004084.1 + 10190 0.69 0.479417
Target:  5'- -cGCggCGGGaGACUUcucaggCGAUCGCCUGGa -3'
miRNA:   3'- gaCGa-GCUC-CUGAA------GCUAGCGGGCCa -5'
16353 5' -57.2 NC_004084.1 + 29507 0.68 0.540848
Target:  5'- -aGCUUG-GGGCUccagccagccUCGAUCGCgcggCCGGUg -3'
miRNA:   3'- gaCGAGCuCCUGA----------AGCUAGCG----GGCCA- -5'
16353 5' -57.2 NC_004084.1 + 47573 0.67 0.55136
Target:  5'- -cGUUCGAGGACgUUCGcgaGCgCGGUg -3'
miRNA:   3'- gaCGAGCUCCUG-AAGCuagCGgGCCA- -5'
16353 5' -57.2 NC_004084.1 + 53412 0.67 0.55136
Target:  5'- aCUcCUCGAGGACcucgUCGAgauGCCCGaGUg -3'
miRNA:   3'- -GAcGAGCUCCUGa---AGCUag-CGGGC-CA- -5'
16353 5' -57.2 NC_004084.1 + 7327 1.06 0.001125
Target:  5'- gCUGCUCGAGGACUUCGAUCGCCCGGUc -3'
miRNA:   3'- -GACGAGCUCCUGAAGCUAGCGGGCCA- -5'
16353 5' -57.2 NC_004084.1 + 54826 0.66 0.61546
Target:  5'- -cGuCUgGAGGACguucgucgCGGUCGCCCGc- -3'
miRNA:   3'- gaC-GAgCUCCUGaa------GCUAGCGGGCca -5'
16353 5' -57.2 NC_004084.1 + 8051 0.66 0.604693
Target:  5'- aCUGCgcggCGuuGAUcUCGAagaugUCGCCCGGg -3'
miRNA:   3'- -GACGa---GCucCUGaAGCU-----AGCGGGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.