miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16363 5' -56.7 NC_004084.1 + 58257 0.66 0.649438
Target:  5'- -cGAUCGCgACCACUacGCCu-GCCCUg -3'
miRNA:   3'- auCUAGCG-UGGUGAcuCGGucUGGGG- -5'
16363 5' -56.7 NC_004084.1 + 17274 0.66 0.638489
Target:  5'- -uGAUCGCACUcagGAGCCuGACaggCCa -3'
miRNA:   3'- auCUAGCGUGGugaCUCGGuCUGg--GG- -5'
16363 5' -56.7 NC_004084.1 + 49846 0.66 0.638489
Target:  5'- gAGGUCGCGCuCGCUcaccuuGUCGGACUCg -3'
miRNA:   3'- aUCUAGCGUG-GUGAcu----CGGUCUGGGg -5'
16363 5' -56.7 NC_004084.1 + 33023 0.66 0.616583
Target:  5'- gAGAUCGC-CCACaugaagcggaccUGGGUCAaGCCCg -3'
miRNA:   3'- aUCUAGCGuGGUG------------ACUCGGUcUGGGg -5'
16363 5' -56.7 NC_004084.1 + 18956 0.66 0.616583
Target:  5'- -cGAU-GCACggaGCUGAGCUAcGACUCCu -3'
miRNA:   3'- auCUAgCGUGg--UGACUCGGU-CUGGGG- -5'
16363 5' -56.7 NC_004084.1 + 57201 0.66 0.616583
Target:  5'- -cGAUCcCGCCGCcGAGCCAG-CCa- -3'
miRNA:   3'- auCUAGcGUGGUGaCUCGGUCuGGgg -5'
16363 5' -56.7 NC_004084.1 + 52147 0.67 0.594731
Target:  5'- cGGAU-GC-CCGCcggGGGCCAGugCUCa -3'
miRNA:   3'- aUCUAgCGuGGUGa--CUCGGUCugGGG- -5'
16363 5' -56.7 NC_004084.1 + 57119 0.67 0.573004
Target:  5'- gAGAUCcUAUCACUcaucgagcGAGCCGGGcauCCCCg -3'
miRNA:   3'- aUCUAGcGUGGUGA--------CUCGGUCU---GGGG- -5'
16363 5' -56.7 NC_004084.1 + 50893 0.67 0.573004
Target:  5'- cUGGAUggcUGCAcCCACUcGGGCgCAGucuCCCCg -3'
miRNA:   3'- -AUCUA---GCGU-GGUGA-CUCG-GUCu--GGGG- -5'
16363 5' -56.7 NC_004084.1 + 16153 0.67 0.551468
Target:  5'- -uGGUCGCGCUGCUcGAGCaucacucGACCaCCa -3'
miRNA:   3'- auCUAGCGUGGUGA-CUCGgu-----CUGG-GG- -5'
16363 5' -56.7 NC_004084.1 + 41439 0.67 0.537602
Target:  5'- -cGAUCGCuuCUACcGAGUCguccaggcgcucgaAGACCCCg -3'
miRNA:   3'- auCUAGCGu-GGUGaCUCGG--------------UCUGGGG- -5'
16363 5' -56.7 NC_004084.1 + 51046 0.68 0.530185
Target:  5'- -cGGUCGCuguucuuCUGCUGuuccucguagauGGCCuGACCCCa -3'
miRNA:   3'- auCUAGCGu------GGUGAC------------UCGGuCUGGGG- -5'
16363 5' -56.7 NC_004084.1 + 2774 0.68 0.530185
Target:  5'- gUGGAgCGCGCCGaugggUGAGaCGGACCCg -3'
miRNA:   3'- -AUCUaGCGUGGUg----ACUCgGUCUGGGg -5'
16363 5' -56.7 NC_004084.1 + 20867 0.68 0.519656
Target:  5'- -uGAUCGguCCACUccacGGUCAGucaGCCCCg -3'
miRNA:   3'- auCUAGCguGGUGAc---UCGGUC---UGGGG- -5'
16363 5' -56.7 NC_004084.1 + 40042 0.68 0.488591
Target:  5'- aAGAcggGCugCACguccGAGCCGucGACCCCg -3'
miRNA:   3'- aUCUag-CGugGUGa---CUCGGU--CUGGGG- -5'
16363 5' -56.7 NC_004084.1 + 18667 0.69 0.429282
Target:  5'- cGGAagGUGCCACcuacGCCAGACCCg -3'
miRNA:   3'- aUCUagCGUGGUGacu-CGGUCUGGGg -5'
16363 5' -56.7 NC_004084.1 + 35685 0.7 0.419813
Target:  5'- ---cUCGUACCGCUGGGC-GGACUUCg -3'
miRNA:   3'- aucuAGCGUGGUGACUCGgUCUGGGG- -5'
16363 5' -56.7 NC_004084.1 + 43602 0.72 0.286129
Target:  5'- gGGAUCGCgaguacgGCCGCUG-GCCGGACaaCCu -3'
miRNA:   3'- aUCUAGCG-------UGGUGACuCGGUCUGg-GG- -5'
16363 5' -56.7 NC_004084.1 + 47658 0.73 0.279737
Target:  5'- gAGGUCgGCGacgcccCCACUggcGAGCCGGAUCCCc -3'
miRNA:   3'- aUCUAG-CGU------GGUGA---CUCGGUCUGGGG- -5'
16363 5' -56.7 NC_004084.1 + 56633 0.76 0.174678
Target:  5'- cGGAUCGUggcucagaacgACCACcucGCCAGGCCCCg -3'
miRNA:   3'- aUCUAGCG-----------UGGUGacuCGGUCUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.