miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16369 3' -54.4 NC_004084.1 + 35297 0.69 0.596318
Target:  5'- aUCGCgAucguCGGCUCGAUCCcG-ACGa -3'
miRNA:   3'- aAGCGgUu---GCCGAGCUAGGaCuUGCg -5'
16369 3' -54.4 NC_004084.1 + 37844 0.69 0.596318
Target:  5'- uUUCGUCGACGGC-CGAUUC-GAACu- -3'
miRNA:   3'- -AAGCGGUUGCCGaGCUAGGaCUUGcg -5'
16369 3' -54.4 NC_004084.1 + 18281 0.69 0.585305
Target:  5'- cUUCGCC-ACGGauuuggUGAUCCUGugcuCGCg -3'
miRNA:   3'- -AAGCGGuUGCCga----GCUAGGACuu--GCG- -5'
16369 3' -54.4 NC_004084.1 + 4286 0.69 0.585305
Target:  5'- -cCGUCAGCGGCUCGAgucggaUCUcGACGUc -3'
miRNA:   3'- aaGCGGUUGCCGAGCUa-----GGAcUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 58211 0.69 0.585305
Target:  5'- -cCGCCGAUGGCcgugCGGgcUCCcgGAACGUc -3'
miRNA:   3'- aaGCGGUUGCCGa---GCU--AGGa-CUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 44357 0.69 0.563405
Target:  5'- gUCGCggugaCAACGGCgagCGAcaccUCCUGAACa- -3'
miRNA:   3'- aAGCG-----GUUGCCGa--GCU----AGGACUUGcg -5'
16369 3' -54.4 NC_004084.1 + 57320 0.7 0.552535
Target:  5'- aUCGCCGACG---CGGUCgUGGACGUa -3'
miRNA:   3'- aAGCGGUUGCcgaGCUAGgACUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 10007 0.7 0.551451
Target:  5'- cUCGCUGA-GGCUCGucgaggcgcucuuGUCUUGGACGUa -3'
miRNA:   3'- aAGCGGUUgCCGAGC-------------UAGGACUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 38454 0.7 0.541729
Target:  5'- gUCGCCuuccCGcGCUCGAUCCg--GCGUa -3'
miRNA:   3'- aAGCGGuu--GC-CGAGCUAGGacuUGCG- -5'
16369 3' -54.4 NC_004084.1 + 43467 0.7 0.541729
Target:  5'- -gCGUCGACGGCcacUCGAgguggugcUCCUGgAGCGUg -3'
miRNA:   3'- aaGCGGUUGCCG---AGCU--------AGGAC-UUGCG- -5'
16369 3' -54.4 NC_004084.1 + 57416 0.7 0.541729
Target:  5'- gUCGCCGGCGaGCUCGAgg-UGGACa- -3'
miRNA:   3'- aAGCGGUUGC-CGAGCUaggACUUGcg -5'
16369 3' -54.4 NC_004084.1 + 28969 0.7 0.530994
Target:  5'- cUUCGCCAcccGCGGCgaGAUCUcgcugcgGAACGCc -3'
miRNA:   3'- -AAGCGGU---UGCCGagCUAGGa------CUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 54032 0.7 0.530994
Target:  5'- aUUCGCCuucgacgagGACGGCUaCGGU--UGGACGCg -3'
miRNA:   3'- -AAGCGG---------UUGCCGA-GCUAggACUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 44538 0.7 0.520338
Target:  5'- cUCGCUccggAACGG-UCGAUgcaCUGAACGCg -3'
miRNA:   3'- aAGCGG----UUGCCgAGCUAg--GACUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 22645 0.7 0.509766
Target:  5'- -gCGCCucCGGCUCGAaCCUcuacgggaucgaGAugGCa -3'
miRNA:   3'- aaGCGGuuGCCGAGCUaGGA------------CUugCG- -5'
16369 3' -54.4 NC_004084.1 + 47661 0.7 0.499286
Target:  5'- gUCGCCAcCGcGCUCGcgaacGUCCUcGAACGg -3'
miRNA:   3'- aAGCGGUuGC-CGAGC-----UAGGA-CUUGCg -5'
16369 3' -54.4 NC_004084.1 + 8240 0.71 0.488902
Target:  5'- gUCGCCGuugGCGGCgaGGUCCUcGACGUc -3'
miRNA:   3'- aAGCGGU---UGCCGagCUAGGAcUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 55128 0.71 0.488902
Target:  5'- -gCGUCGACGGUguucuuggccUCGAacggaCCUGGGCGCa -3'
miRNA:   3'- aaGCGGUUGCCG----------AGCUa----GGACUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 8330 0.72 0.438615
Target:  5'- gUCGUCAGCGGCgUCGAUCguCUcGACGUc -3'
miRNA:   3'- aAGCGGUUGCCG-AGCUAG--GAcUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 47386 0.72 0.438615
Target:  5'- gUCGUCGACGGCgagcUCCaGGGCGCg -3'
miRNA:   3'- aAGCGGUUGCCGagcuAGGaCUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.