miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16407 5' -51.4 NC_004084.1 + 11922 0.73 0.610045
Target:  5'- cGGCGACCGg------CGACGUCGCGa -3'
miRNA:   3'- uCUGCUGGCagcuauaGCUGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 12132 0.67 0.901164
Target:  5'- cGACGAcuacgacuCCGUCGAcgaagcgAUgGAUGUCGCa -3'
miRNA:   3'- uCUGCU--------GGCAGCUa------UAgCUGCAGUGc -5'
16407 5' -51.4 NC_004084.1 + 14085 0.76 0.441772
Target:  5'- cGACGuagaCGUCGAUGUCGuCGUgGCGg -3'
miRNA:   3'- uCUGCug--GCAGCUAUAGCuGCAgUGC- -5'
16407 5' -51.4 NC_004084.1 + 15019 0.67 0.894174
Target:  5'- -uGCGGCuCGUCGAgcGUCGACGgcCACu -3'
miRNA:   3'- ucUGCUG-GCAGCUa-UAGCUGCa-GUGc -5'
16407 5' -51.4 NC_004084.1 + 16428 0.71 0.719402
Target:  5'- aAGACGG-CGUCGAUGUgGGCaucgGUUACGg -3'
miRNA:   3'- -UCUGCUgGCAGCUAUAgCUG----CAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 16486 0.7 0.775548
Target:  5'- gAGACGACCaUCGGgaUAUCGccacagcaggcgaucGCGUCGCc -3'
miRNA:   3'- -UCUGCUGGcAGCU--AUAGC---------------UGCAGUGc -5'
16407 5' -51.4 NC_004084.1 + 16914 0.68 0.877096
Target:  5'- cAGGCGAUCGuggccgggugcgguUCGGcAUCGgcggGCGUCGCGa -3'
miRNA:   3'- -UCUGCUGGC--------------AGCUaUAGC----UGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 17043 0.69 0.810681
Target:  5'- -uGCGcCCGUCGAUGcggugacUGACGUCGCa -3'
miRNA:   3'- ucUGCuGGCAGCUAUa------GCUGCAGUGc -5'
16407 5' -51.4 NC_004084.1 + 17158 0.67 0.894174
Target:  5'- gGGACGAUCGcCGg---CGACGUCgaagGCGa -3'
miRNA:   3'- -UCUGCUGGCaGCuauaGCUGCAG----UGC- -5'
16407 5' -51.4 NC_004084.1 + 17334 0.67 0.907884
Target:  5'- cGACGGCCcgcaUCGucucGUCGACGuacUCGCGg -3'
miRNA:   3'- uCUGCUGGc---AGCua--UAGCUGC---AGUGC- -5'
16407 5' -51.4 NC_004084.1 + 17510 0.7 0.749985
Target:  5'- uGACGGCaucccguCGUCgGAUAUCGauguugaagGCGUCACGa -3'
miRNA:   3'- uCUGCUG-------GCAG-CUAUAGC---------UGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 18425 0.66 0.926397
Target:  5'- uGGACGGgC-UCGAUcUCGAuauaucCGUCACGa -3'
miRNA:   3'- -UCUGCUgGcAGCUAuAGCU------GCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 18797 0.67 0.886918
Target:  5'- cGAuCGACuCGUCGAg---GACGUCGCc -3'
miRNA:   3'- uCU-GCUG-GCAGCUauagCUGCAGUGc -5'
16407 5' -51.4 NC_004084.1 + 19078 0.72 0.676079
Target:  5'- -cGCGGCCGUCuacGUCGACGUCGa- -3'
miRNA:   3'- ucUGCUGGCAGcuaUAGCUGCAGUgc -5'
16407 5' -51.4 NC_004084.1 + 19963 0.77 0.376655
Target:  5'- gAGcCGGCCGUgguugaCGAcGUCGACGUCGCGc -3'
miRNA:   3'- -UCuGCUGGCA------GCUaUAGCUGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 20059 0.67 0.914331
Target:  5'- cGAUG-CUGUCGAUAcCGACGaCGCc -3'
miRNA:   3'- uCUGCuGGCAGCUAUaGCUGCaGUGc -5'
16407 5' -51.4 NC_004084.1 + 20096 1.09 0.003785
Target:  5'- aAGACGACCGUCGAUAUCGACGUCACGc -3'
miRNA:   3'- -UCUGCUGGCAGCUAUAGCUGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 21487 0.68 0.863607
Target:  5'- cGGCGAUCGccUCGGUugcGUCGuagGCGUCACc -3'
miRNA:   3'- uCUGCUGGC--AGCUA---UAGC---UGCAGUGc -5'
16407 5' -51.4 NC_004084.1 + 21711 0.8 0.267052
Target:  5'- cGGCGACCGUCGAcgagauccgCGACGUCAUc -3'
miRNA:   3'- uCUGCUGGCAGCUaua------GCUGCAGUGc -5'
16407 5' -51.4 NC_004084.1 + 21768 0.67 0.901164
Target:  5'- cGGgGAUCGgCGGcAUCGACGUCGgGg -3'
miRNA:   3'- uCUgCUGGCaGCUaUAGCUGCAGUgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.