miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16407 5' -51.4 NC_004084.1 + 409 0.76 0.441772
Target:  5'- cAGACG-UCGUCGAUcUgGACGUCGCa -3'
miRNA:   3'- -UCUGCuGGCAGCUAuAgCUGCAGUGc -5'
16407 5' -51.4 NC_004084.1 + 775 0.69 0.810681
Target:  5'- cGAuCGGCuCGUCGAgg-CGACG-CGCGa -3'
miRNA:   3'- uCU-GCUG-GCAGCUauaGCUGCaGUGC- -5'
16407 5' -51.4 NC_004084.1 + 879 0.76 0.441772
Target:  5'- cGACGucGCCGUCGGaaucgguaucgcUGUCGGCGUCGuCGg -3'
miRNA:   3'- uCUGC--UGGCAGCU------------AUAGCUGCAGU-GC- -5'
16407 5' -51.4 NC_004084.1 + 1554 0.68 0.855343
Target:  5'- cGACGGCCGUCGAgccggagcccgCGAacggguccaggacgaCGUCGCc -3'
miRNA:   3'- uCUGCUGGCAGCUaua--------GCU---------------GCAGUGc -5'
16407 5' -51.4 NC_004084.1 + 1970 0.66 0.937353
Target:  5'- gAGAgCGcGCCGUCGAgAUCGuCGUUccgACGg -3'
miRNA:   3'- -UCU-GC-UGGCAGCUaUAGCuGCAG---UGC- -5'
16407 5' -51.4 NC_004084.1 + 3814 0.68 0.863607
Target:  5'- cGGCGACC-UCGAUccagucuucGUCGACGcCgACGa -3'
miRNA:   3'- uCUGCUGGcAGCUA---------UAGCUGCaG-UGC- -5'
16407 5' -51.4 NC_004084.1 + 4157 0.67 0.886918
Target:  5'- cAGACGGCCGa------UGACGUCGCGg -3'
miRNA:   3'- -UCUGCUGGCagcuauaGCUGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 4924 0.67 0.901164
Target:  5'- cGACGACU-UCGccGUCGACGUaCugGa -3'
miRNA:   3'- uCUGCUGGcAGCuaUAGCUGCA-GugC- -5'
16407 5' -51.4 NC_004084.1 + 4968 0.66 0.932014
Target:  5'- cGACGACCcaCGAggagAUCGGCGggaccCACu -3'
miRNA:   3'- uCUGCUGGcaGCUa---UAGCUGCa----GUGc -5'
16407 5' -51.4 NC_004084.1 + 5119 0.82 0.194932
Target:  5'- uGGcCGACCGUCGAUAcaaccUCGGCGUgGCGa -3'
miRNA:   3'- -UCuGCUGGCAGCUAU-----AGCUGCAgUGC- -5'
16407 5' -51.4 NC_004084.1 + 5359 0.67 0.894174
Target:  5'- cGAgGACUGggaCGAUcUCGACGUCGa- -3'
miRNA:   3'- uCUgCUGGCa--GCUAuAGCUGCAGUgc -5'
16407 5' -51.4 NC_004084.1 + 6795 0.67 0.907225
Target:  5'- gGGACGuucUCGaaggcaaUCGAUGUCGccagagACGUCACGa -3'
miRNA:   3'- -UCUGCu--GGC-------AGCUAUAGC------UGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 7803 0.66 0.932014
Target:  5'- --cUGACCGUCGAcgaccUCGACG-CugGa -3'
miRNA:   3'- ucuGCUGGCAGCUau---AGCUGCaGugC- -5'
16407 5' -51.4 NC_004084.1 + 8238 0.74 0.555438
Target:  5'- aGGGCGA-CGUCGAgacgAUCGACGcCGCu -3'
miRNA:   3'- -UCUGCUgGCAGCUa---UAGCUGCaGUGc -5'
16407 5' -51.4 NC_004084.1 + 8540 0.69 0.83812
Target:  5'- -cGCGACC-UCGAgAUCGACGUC-Cu -3'
miRNA:   3'- ucUGCUGGcAGCUaUAGCUGCAGuGc -5'
16407 5' -51.4 NC_004084.1 + 9095 0.78 0.359275
Target:  5'- cGcCGACCGggCGAUGUCGACGagcUCACGc -3'
miRNA:   3'- uCuGCUGGCa-GCUAUAGCUGC---AGUGC- -5'
16407 5' -51.4 NC_004084.1 + 9348 0.77 0.413074
Target:  5'- --cCGACCGUCGcacGUCGACgGUCACGa -3'
miRNA:   3'- ucuGCUGGCAGCua-UAGCUG-CAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 9423 0.69 0.810681
Target:  5'- cGACacgGACCGcgCGAUGggccgCGACGUCgACGa -3'
miRNA:   3'- uCUG---CUGGCa-GCUAUa----GCUGCAG-UGC- -5'
16407 5' -51.4 NC_004084.1 + 11007 0.66 0.937353
Target:  5'- cGACGuCCuUCGGcuUCGuCGUCGCGc -3'
miRNA:   3'- uCUGCuGGcAGCUauAGCuGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 11065 0.66 0.938901
Target:  5'- gGGGCGGCCGccgacgaacaugugcUUGAgGUCGGCGacgagaucgccguUCGCGg -3'
miRNA:   3'- -UCUGCUGGC---------------AGCUaUAGCUGC-------------AGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.