miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16407 5' -51.4 NC_004084.1 + 17510 0.7 0.749985
Target:  5'- uGACGGCaucccguCGUCgGAUAUCGauguugaagGCGUCACGa -3'
miRNA:   3'- uCUGCUG-------GCAG-CUAUAGC---------UGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 11922 0.73 0.610045
Target:  5'- cGGCGACCGg------CGACGUCGCGa -3'
miRNA:   3'- uCUGCUGGCagcuauaGCUGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 52473 0.72 0.643108
Target:  5'- cGAUGGCCGaggCGAagcgCGACGUCAUGu -3'
miRNA:   3'- uCUGCUGGCa--GCUaua-GCUGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 26399 0.72 0.665117
Target:  5'- cGACGGCa-UCGAUAUCGGCGUaauuCGa -3'
miRNA:   3'- uCUGCUGgcAGCUAUAGCUGCAgu--GC- -5'
16407 5' -51.4 NC_004084.1 + 41627 0.72 0.665117
Target:  5'- gAGGCGACgGUCcggGAcAUCGACGUCGa- -3'
miRNA:   3'- -UCUGCUGgCAG---CUaUAGCUGCAGUgc -5'
16407 5' -51.4 NC_004084.1 + 41778 0.72 0.665117
Target:  5'- cGGACGA-CGUCGAcgacGagGGCGUCACGa -3'
miRNA:   3'- -UCUGCUgGCAGCUa---UagCUGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 19078 0.72 0.676079
Target:  5'- -cGCGGCCGUCuacGUCGACGUCGa- -3'
miRNA:   3'- ucUGCUGGCAGcuaUAGCUGCAGUgc -5'
16407 5' -51.4 NC_004084.1 + 16428 0.71 0.719402
Target:  5'- aAGACGG-CGUCGAUGUgGGCaucgGUUACGg -3'
miRNA:   3'- -UCUGCUgGCAGCUAUAgCUG----CAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 35227 0.71 0.730045
Target:  5'- cGACGAUCG-CGA--UCGACGUCGa- -3'
miRNA:   3'- uCUGCUGGCaGCUauAGCUGCAGUgc -5'
16407 5' -51.4 NC_004084.1 + 51187 0.73 0.588083
Target:  5'- cGcCGAUCGUCGAgGUCGGCGcuggCGCGg -3'
miRNA:   3'- uCuGCUGGCAGCUaUAGCUGCa---GUGC- -5'
16407 5' -51.4 NC_004084.1 + 8238 0.74 0.555438
Target:  5'- aGGGCGA-CGUCGAgacgAUCGACGcCGCu -3'
miRNA:   3'- -UCUGCUgGCAGCUa---UAGCUGCaGUGc -5'
16407 5' -51.4 NC_004084.1 + 26864 0.74 0.554358
Target:  5'- cGACGAUUGUCGGUAgcgCGAUGUCcuccgagGCGa -3'
miRNA:   3'- uCUGCUGGCAGCUAUa--GCUGCAG-------UGC- -5'
16407 5' -51.4 NC_004084.1 + 42322 0.85 0.132832
Target:  5'- cGACGACCGUCGGgacgagAUCGACGagGCGg -3'
miRNA:   3'- uCUGCUGGCAGCUa-----UAGCUGCagUGC- -5'
16407 5' -51.4 NC_004084.1 + 5119 0.82 0.194932
Target:  5'- uGGcCGACCGUCGAUAcaaccUCGGCGUgGCGa -3'
miRNA:   3'- -UCuGCUGGCAGCUAU-----AGCUGCAgUGC- -5'
16407 5' -51.4 NC_004084.1 + 21711 0.8 0.267052
Target:  5'- cGGCGACCGUCGAcgagauccgCGACGUCAUc -3'
miRNA:   3'- uCUGCUGGCAGCUaua------GCUGCAGUGc -5'
16407 5' -51.4 NC_004084.1 + 26689 0.79 0.302957
Target:  5'- gAGGCGACauCGUCGAUAUCGGCGuagUCAUa -3'
miRNA:   3'- -UCUGCUG--GCAGCUAUAGCUGC---AGUGc -5'
16407 5' -51.4 NC_004084.1 + 9348 0.77 0.413074
Target:  5'- --cCGACCGUCGcacGUCGACgGUCACGa -3'
miRNA:   3'- ucuGCUGGCAGCua-UAGCUG-CAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 46999 0.76 0.441772
Target:  5'- gAGACGACCG-CGAguuccucGagGACGUCGCGa -3'
miRNA:   3'- -UCUGCUGGCaGCUa------UagCUGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 40858 0.75 0.481722
Target:  5'- cGAacUGGCCGUCGAgAUCGACGUUcCGg -3'
miRNA:   3'- uCU--GCUGGCAGCUaUAGCUGCAGuGC- -5'
16407 5' -51.4 NC_004084.1 + 51226 0.75 0.491983
Target:  5'- cGugGugCGUCGAgcagcUCGACGUC-CGg -3'
miRNA:   3'- uCugCugGCAGCUau---AGCUGCAGuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.