miRNA display CGI


Results 1 - 20 of 95 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16407 5' -51.4 NC_004084.1 + 20096 1.09 0.003785
Target:  5'- aAGACGACCGUCGAUAUCGACGUCACGc -3'
miRNA:   3'- -UCUGCUGGCAGCUAUAGCUGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 42322 0.85 0.132832
Target:  5'- cGACGACCGUCGGgacgagAUCGACGagGCGg -3'
miRNA:   3'- uCUGCUGGCAGCUa-----UAGCUGCagUGC- -5'
16407 5' -51.4 NC_004084.1 + 5119 0.82 0.194932
Target:  5'- uGGcCGACCGUCGAUAcaaccUCGGCGUgGCGa -3'
miRNA:   3'- -UCuGCUGGCAGCUAU-----AGCUGCAgUGC- -5'
16407 5' -51.4 NC_004084.1 + 21711 0.8 0.267052
Target:  5'- cGGCGACCGUCGAcgagauccgCGACGUCAUc -3'
miRNA:   3'- uCUGCUGGCAGCUaua------GCUGCAGUGc -5'
16407 5' -51.4 NC_004084.1 + 26689 0.79 0.302957
Target:  5'- gAGGCGACauCGUCGAUAUCGGCGuagUCAUa -3'
miRNA:   3'- -UCUGCUG--GCAGCUAUAGCUGC---AGUGc -5'
16407 5' -51.4 NC_004084.1 + 9095 0.78 0.359275
Target:  5'- cGcCGACCGggCGAUGUCGACGagcUCACGc -3'
miRNA:   3'- uCuGCUGGCa-GCUAUAGCUGC---AGUGC- -5'
16407 5' -51.4 NC_004084.1 + 19963 0.77 0.376655
Target:  5'- gAGcCGGCCGUgguugaCGAcGUCGACGUCGCGc -3'
miRNA:   3'- -UCuGCUGGCA------GCUaUAGCUGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 9348 0.77 0.413074
Target:  5'- --cCGACCGUCGcacGUCGACgGUCACGa -3'
miRNA:   3'- ucuGCUGGCAGCua-UAGCUG-CAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 879 0.76 0.441772
Target:  5'- cGACGucGCCGUCGGaaucgguaucgcUGUCGGCGUCGuCGg -3'
miRNA:   3'- uCUGC--UGGCAGCU------------AUAGCUGCAGU-GC- -5'
16407 5' -51.4 NC_004084.1 + 409 0.76 0.441772
Target:  5'- cAGACG-UCGUCGAUcUgGACGUCGCa -3'
miRNA:   3'- -UCUGCuGGCAGCUAuAgCUGCAGUGc -5'
16407 5' -51.4 NC_004084.1 + 14085 0.76 0.441772
Target:  5'- cGACGuagaCGUCGAUGUCGuCGUgGCGg -3'
miRNA:   3'- uCUGCug--GCAGCUAUAGCuGCAgUGC- -5'
16407 5' -51.4 NC_004084.1 + 46999 0.76 0.441772
Target:  5'- gAGACGACCG-CGAguuccucGagGACGUCGCGa -3'
miRNA:   3'- -UCUGCUGGCaGCUa------UagCUGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 48898 0.75 0.471566
Target:  5'- uGAUGACCGUCGGUcgGUCGGC--CACGa -3'
miRNA:   3'- uCUGCUGGCAGCUA--UAGCUGcaGUGC- -5'
16407 5' -51.4 NC_004084.1 + 40858 0.75 0.481722
Target:  5'- cGAacUGGCCGUCGAgAUCGACGUUcCGg -3'
miRNA:   3'- uCU--GCUGGCAGCUaUAGCUGCAGuGC- -5'
16407 5' -51.4 NC_004084.1 + 51226 0.75 0.491983
Target:  5'- cGugGugCGUCGAgcagcUCGACGUC-CGg -3'
miRNA:   3'- uCugCugGCAGCUau---AGCUGCAGuGC- -5'
16407 5' -51.4 NC_004084.1 + 49341 0.74 0.533967
Target:  5'- cGGCGAUCGugUCGAggugaucGUCGACGUCGCc -3'
miRNA:   3'- uCUGCUGGC--AGCUa------UAGCUGCAGUGc -5'
16407 5' -51.4 NC_004084.1 + 26864 0.74 0.554358
Target:  5'- cGACGAUUGUCGGUAgcgCGAUGUCcuccgagGCGa -3'
miRNA:   3'- uCUGCUGGCAGCUAUa--GCUGCAG-------UGC- -5'
16407 5' -51.4 NC_004084.1 + 8238 0.74 0.555438
Target:  5'- aGGGCGA-CGUCGAgacgAUCGACGcCGCu -3'
miRNA:   3'- -UCUGCUgGCAGCUa---UAGCUGCaGUGc -5'
16407 5' -51.4 NC_004084.1 + 46400 0.73 0.577153
Target:  5'- cGACGAUCGgcgacggCGAaguUGUUGACGUCGCu -3'
miRNA:   3'- uCUGCUGGCa------GCU---AUAGCUGCAGUGc -5'
16407 5' -51.4 NC_004084.1 + 51187 0.73 0.588083
Target:  5'- cGcCGAUCGUCGAgGUCGGCGcuggCGCGg -3'
miRNA:   3'- uCuGCUGGCAGCUaUAGCUGCa---GUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.