miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16449 5' -57.4 NC_004084.1 + 40217 1.1 0.000569
Target:  5'- gCUGGACGAGGAGACGCGGAAGCUGGCc -3'
miRNA:   3'- -GACCUGCUCCUCUGCGCCUUCGACCG- -5'
16449 5' -57.4 NC_004084.1 + 4069 0.73 0.271967
Target:  5'- -gGGcGCGAGGAGAUGCGGAAcCUGa- -3'
miRNA:   3'- gaCC-UGCUCCUCUGCGCCUUcGACcg -5'
16449 5' -57.4 NC_004084.1 + 17283 0.72 0.28577
Target:  5'- -cGGugGAGGcGGugGCGGcGGUggcGGCg -3'
miRNA:   3'- gaCCugCUCC-UCugCGCCuUCGa--CCG- -5'
16449 5' -57.4 NC_004084.1 + 29643 0.71 0.363032
Target:  5'- -cGGACGucGAcgaccGCGCGGAcAGCUGGUa -3'
miRNA:   3'- gaCCUGCucCUc----UGCGCCU-UCGACCG- -5'
16449 5' -57.4 NC_004084.1 + 41484 0.7 0.380125
Target:  5'- -cGGGCGAgaacGGAagacGAuCGCGGAugccGCUGGCg -3'
miRNA:   3'- gaCCUGCU----CCU----CU-GCGCCUu---CGACCG- -5'
16449 5' -57.4 NC_004084.1 + 9851 0.7 0.397748
Target:  5'- --cGGCGAGGGcggcucACGCGGGAGCccGGCg -3'
miRNA:   3'- gacCUGCUCCUc-----UGCGCCUUCGa-CCG- -5'
16449 5' -57.4 NC_004084.1 + 15270 0.7 0.397748
Target:  5'- -aGGAgGAGGcGGCGgcaauaucCGGcGGCUGGCg -3'
miRNA:   3'- gaCCUgCUCCuCUGC--------GCCuUCGACCG- -5'
16449 5' -57.4 NC_004084.1 + 6425 0.7 0.404039
Target:  5'- -cGGAUGAcGAGACGUggugcgcccgaggaGGguGCUGGCg -3'
miRNA:   3'- gaCCUGCUcCUCUGCG--------------CCuuCGACCG- -5'
16449 5' -57.4 NC_004084.1 + 40917 0.7 0.415887
Target:  5'- cCUGGACGAGGAG-CaGCuaccGGGCUGGa -3'
miRNA:   3'- -GACCUGCUCCUCuG-CGcc--UUCGACCg -5'
16449 5' -57.4 NC_004084.1 + 9687 0.69 0.425144
Target:  5'- -gGGugGcccgccGGAGAcCGCGGuGAGUUGGCc -3'
miRNA:   3'- gaCCugCu-----CCUCU-GCGCC-UUCGACCG- -5'
16449 5' -57.4 NC_004084.1 + 41402 0.69 0.46336
Target:  5'- -aGGGCGAGGAGGcCG-GGAAGgUaGCg -3'
miRNA:   3'- gaCCUGCUCCUCU-GCgCCUUCgAcCG- -5'
16449 5' -57.4 NC_004084.1 + 28286 0.69 0.46336
Target:  5'- gUGGACG-GGAGucuCGCGaucGggGC-GGCg -3'
miRNA:   3'- gACCUGCuCCUCu--GCGC---CuuCGaCCG- -5'
16449 5' -57.4 NC_004084.1 + 17327 0.68 0.493167
Target:  5'- --cGAuCGAGGAGAucaaCGcCGGAGGCgagGGCu -3'
miRNA:   3'- gacCU-GCUCCUCU----GC-GCCUUCGa--CCG- -5'
16449 5' -57.4 NC_004084.1 + 53005 0.68 0.503299
Target:  5'- -cGGACGGccacGAGACcuacuggaucgaGCGGAagaaguccGGCUGGCa -3'
miRNA:   3'- gaCCUGCUc---CUCUG------------CGCCU--------UCGACCG- -5'
16449 5' -57.4 NC_004084.1 + 10983 0.68 0.513519
Target:  5'- uCUGGACugGAGGAGAUGCGGcugacGAGgaGcCg -3'
miRNA:   3'- -GACCUG--CUCCUCUGCGCC-----UUCgaCcG- -5'
16449 5' -57.4 NC_004084.1 + 13774 0.68 0.513519
Target:  5'- gCUGGGCGGgcucGGAGAuCGCGuccGGUUGGUc -3'
miRNA:   3'- -GACCUGCU----CCUCU-GCGCcu-UCGACCG- -5'
16449 5' -57.4 NC_004084.1 + 45702 0.67 0.541519
Target:  5'- -cGGAgacaagcaacuccuCGAGGGauccGACGCGGu-GCUGGUc -3'
miRNA:   3'- gaCCU--------------GCUCCU----CUGCGCCuuCGACCG- -5'
16449 5' -57.4 NC_004084.1 + 51615 0.67 0.544662
Target:  5'- --uGACGucGAcGGCGCGGGAGCUGa- -3'
miRNA:   3'- gacCUGCucCU-CUGCGCCUUCGACcg -5'
16449 5' -57.4 NC_004084.1 + 30420 0.67 0.565761
Target:  5'- --cGACG-GGcGGCGaCGGAAGCgaUGGCg -3'
miRNA:   3'- gacCUGCuCCuCUGC-GCCUUCG--ACCG- -5'
16449 5' -57.4 NC_004084.1 + 55964 0.67 0.576392
Target:  5'- -gGGuACGAcGGcGACGCGGAggGGCUGa- -3'
miRNA:   3'- gaCC-UGCU-CCuCUGCGCCU--UCGACcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.