miRNA display CGI


Results 1 - 20 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16449 5' -57.4 NC_004084.1 + 4069 0.73 0.271967
Target:  5'- -gGGcGCGAGGAGAUGCGGAAcCUGa- -3'
miRNA:   3'- gaCC-UGCUCCUCUGCGCCUUcGACcg -5'
16449 5' -57.4 NC_004084.1 + 6425 0.7 0.404039
Target:  5'- -cGGAUGAcGAGACGUggugcgcccgaggaGGguGCUGGCg -3'
miRNA:   3'- gaCCUGCUcCUCUGCG--------------CCuuCGACCG- -5'
16449 5' -57.4 NC_004084.1 + 9231 0.66 0.619274
Target:  5'- gUGGAgCGAGGAGAaguucaagaGCG--AGCUGGa -3'
miRNA:   3'- gACCU-GCUCCUCUg--------CGCcuUCGACCg -5'
16449 5' -57.4 NC_004084.1 + 9687 0.69 0.425144
Target:  5'- -gGGugGcccgccGGAGAcCGCGGuGAGUUGGCc -3'
miRNA:   3'- gaCCugCu-----CCUCU-GCGCC-UUCGACCG- -5'
16449 5' -57.4 NC_004084.1 + 9851 0.7 0.397748
Target:  5'- --cGGCGAGGGcggcucACGCGGGAGCccGGCg -3'
miRNA:   3'- gacCUGCUCCUc-----UGCGCCUUCGa-CCG- -5'
16449 5' -57.4 NC_004084.1 + 10983 0.68 0.513519
Target:  5'- uCUGGACugGAGGAGAUGCGGcugacGAGgaGcCg -3'
miRNA:   3'- -GACCUG--CUCCUCUGCGCC-----UUCgaCcG- -5'
16449 5' -57.4 NC_004084.1 + 13774 0.68 0.513519
Target:  5'- gCUGGGCGGgcucGGAGAuCGCGuccGGUUGGUc -3'
miRNA:   3'- -GACCUGCU----CCUCU-GCGCcu-UCGACCG- -5'
16449 5' -57.4 NC_004084.1 + 15270 0.7 0.397748
Target:  5'- -aGGAgGAGGcGGCGgcaauaucCGGcGGCUGGCg -3'
miRNA:   3'- gaCCUgCUCCuCUGC--------GCCuUCGACCG- -5'
16449 5' -57.4 NC_004084.1 + 16646 0.66 0.651576
Target:  5'- -gGGGCG-GGuGACGCaGccGCUGGa -3'
miRNA:   3'- gaCCUGCuCCuCUGCGcCuuCGACCg -5'
16449 5' -57.4 NC_004084.1 + 17283 0.72 0.28577
Target:  5'- -cGGugGAGGcGGugGCGGcGGUggcGGCg -3'
miRNA:   3'- gaCCugCUCC-UCugCGCCuUCGa--CCG- -5'
16449 5' -57.4 NC_004084.1 + 17327 0.68 0.493167
Target:  5'- --cGAuCGAGGAGAucaaCGcCGGAGGCgagGGCu -3'
miRNA:   3'- gacCU-GCUCCUCU----GC-GCCUUCGa--CCG- -5'
16449 5' -57.4 NC_004084.1 + 24026 0.66 0.633274
Target:  5'- aUGGACGcgguugcGGGcucccagacggcgauGGACGCGGuuGC-GGCg -3'
miRNA:   3'- gACCUGC-------UCC---------------UCUGCGCCuuCGaCCG- -5'
16449 5' -57.4 NC_004084.1 + 24738 0.66 0.630042
Target:  5'- uUGGAUcAGcGAG-CGUGGAAgacgauuugucGCUGGCg -3'
miRNA:   3'- gACCUGcUC-CUCuGCGCCUU-----------CGACCG- -5'
16449 5' -57.4 NC_004084.1 + 28286 0.69 0.46336
Target:  5'- gUGGACG-GGAGucuCGCGaucGggGC-GGCg -3'
miRNA:   3'- gACCUGCuCCUCu--GCGC---CuuCGaCCG- -5'
16449 5' -57.4 NC_004084.1 + 28461 0.66 0.605291
Target:  5'- -cGcGACGAGGAcaucaccugggacuGGCaCGGAgccaacaacgGGCUGGCg -3'
miRNA:   3'- gaC-CUGCUCCU--------------CUGcGCCU----------UCGACCG- -5'
16449 5' -57.4 NC_004084.1 + 29643 0.71 0.363032
Target:  5'- -cGGACGucGAcgaccGCGCGGAcAGCUGGUa -3'
miRNA:   3'- gaCCUGCucCUc----UGCGCCU-UCGACCG- -5'
16449 5' -57.4 NC_004084.1 + 30420 0.67 0.565761
Target:  5'- --cGACG-GGcGGCGaCGGAAGCgaUGGCg -3'
miRNA:   3'- gacCUGCuCCuCUGC-GCCUUCG--ACCG- -5'
16449 5' -57.4 NC_004084.1 + 32447 0.66 0.597777
Target:  5'- -aGGuCGAGGucGAUGgGGAAGCcgaugagaugaUGGCc -3'
miRNA:   3'- gaCCuGCUCCu-CUGCgCCUUCG-----------ACCG- -5'
16449 5' -57.4 NC_004084.1 + 32723 0.66 0.651576
Target:  5'- gUGGAUGAGGGGAuCGgGGcAGCa--- -3'
miRNA:   3'- gACCUGCUCCUCU-GCgCCuUCGaccg -5'
16449 5' -57.4 NC_004084.1 + 37019 0.66 0.608515
Target:  5'- gCUGGACGuc--GAC-CGGAucaugcccgAGCUGGCa -3'
miRNA:   3'- -GACCUGCuccuCUGcGCCU---------UCGACCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.