miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16453 3' -54.3 NC_004084.1 + 31162 0.69 0.650516
Target:  5'- cGCGA---GAUCUCGUCGagcGCGGUUCCGg -3'
miRNA:   3'- -UGCUcaaCUAGGGCAGC---UGCUAGGGC- -5'
16453 3' -54.3 NC_004084.1 + 32030 0.67 0.76654
Target:  5'- uCGGGUUcGAggaCCUcuaCGACGAUCCCGa -3'
miRNA:   3'- uGCUCAA-CUa--GGGca-GCUGCUAGGGC- -5'
16453 3' -54.3 NC_004084.1 + 32399 0.74 0.360147
Target:  5'- uCGAGUccgcguucGGUCCCGUCGACGAgCUCGc -3'
miRNA:   3'- uGCUCAa-------CUAGGGCAGCUGCUaGGGC- -5'
16453 3' -54.3 NC_004084.1 + 35051 0.67 0.756446
Target:  5'- cGCGAcg-GAUCCgaaCGUCGACGucgaCCCGg -3'
miRNA:   3'- -UGCUcaaCUAGG---GCAGCUGCua--GGGC- -5'
16453 3' -54.3 NC_004084.1 + 35375 0.69 0.61794
Target:  5'- cGCGaAGUgcgccaaGAUCaCGUCGACGAccuUCCCGa -3'
miRNA:   3'- -UGC-UCAa------CUAGgGCAGCUGCU---AGGGC- -5'
16453 3' -54.3 NC_004084.1 + 36703 0.76 0.282767
Target:  5'- gACGucgcgGAUCUCGUCGACGGUCgCCGa -3'
miRNA:   3'- -UGCucaa-CUAGGGCAGCUGCUAG-GGC- -5'
16453 3' -54.3 NC_004084.1 + 39574 0.7 0.607093
Target:  5'- uCGAGcag--CUCGUCGACGAggUCCCGg -3'
miRNA:   3'- uGCUCaacuaGGGCAGCUGCU--AGGGC- -5'
16453 3' -54.3 NC_004084.1 + 40957 1.09 0.001585
Target:  5'- aACGAGUUGAUCCCGUCGACGAUCCCGg -3'
miRNA:   3'- -UGCUCAACUAGGGCAGCUGCUAGGGC- -5'
16453 3' -54.3 NC_004084.1 + 44153 0.7 0.574711
Target:  5'- gACGAGgaccuccaccUGGUCCCgGUCGACacuguUCCCGg -3'
miRNA:   3'- -UGCUCa---------ACUAGGG-CAGCUGcu---AGGGC- -5'
16453 3' -54.3 NC_004084.1 + 44900 0.71 0.521756
Target:  5'- uCGA--UGAUCCCGgCGACGA-CCCGc -3'
miRNA:   3'- uGCUcaACUAGGGCaGCUGCUaGGGC- -5'
16453 3' -54.3 NC_004084.1 + 49352 0.66 0.832833
Target:  5'- uCGAGgUGA--UCGUCGACGucgCCCGa -3'
miRNA:   3'- uGCUCaACUagGGCAGCUGCua-GGGC- -5'
16453 3' -54.3 NC_004084.1 + 49549 0.68 0.704343
Target:  5'- aGCG-GUUGGUCCguCGUCGACGuaCUCGa -3'
miRNA:   3'- -UGCuCAACUAGG--GCAGCUGCuaGGGC- -5'
16453 3' -54.3 NC_004084.1 + 49606 0.69 0.650516
Target:  5'- gGCGAGU---UCgCCGUCGACGGagaUCUCGu -3'
miRNA:   3'- -UGCUCAacuAG-GGCAGCUGCU---AGGGC- -5'
16453 3' -54.3 NC_004084.1 + 51112 0.71 0.550154
Target:  5'- aGCGAGagGAgCUCGUCcaggaguacgcuugGGCGAUCCCGa -3'
miRNA:   3'- -UGCUCaaCUaGGGCAG--------------CUGCUAGGGC- -5'
16453 3' -54.3 NC_004084.1 + 51509 0.69 0.628799
Target:  5'- -aGAGUggGAgCUCGUCGagacggucGCGAUCCCGa -3'
miRNA:   3'- ugCUCAa-CUaGGGCAGC--------UGCUAGGGC- -5'
16453 3' -54.3 NC_004084.1 + 52972 0.68 0.725467
Target:  5'- cGCGAGUgcgcUGGUCgCCGaUCG-CGAUCCa- -3'
miRNA:   3'- -UGCUCA----ACUAG-GGC-AGCuGCUAGGgc -5'
16453 3' -54.3 NC_004084.1 + 53718 0.67 0.776499
Target:  5'- uCGA--UGAUCUCGUCGGCucGGUCCuCGa -3'
miRNA:   3'- uGCUcaACUAGGGCAGCUG--CUAGG-GC- -5'
16453 3' -54.3 NC_004084.1 + 55351 0.71 0.511381
Target:  5'- gACGAGcgg--CCCGUCGACGAguUCCuCGa -3'
miRNA:   3'- -UGCUCaacuaGGGCAGCUGCU--AGG-GC- -5'
16453 3' -54.3 NC_004084.1 + 55966 0.69 0.628799
Target:  5'- aGCGuGgcucgGAUCUCGUCGACGGUCg-- -3'
miRNA:   3'- -UGCuCaa---CUAGGGCAGCUGCUAGggc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.