Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16459 | 3' | -53.9 | NC_004084.1 | + | 583 | 0.68 | 0.717579 |
Target: 5'- -cGUCGAuGUGCUcuUCGGUGAGGAcgccCUCg -3' miRNA: 3'- gcUAGCU-CGCGG--AGCUACUCCUu---GAG- -5' |
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16459 | 3' | -53.9 | NC_004084.1 | + | 1728 | 0.66 | 0.80913 |
Target: 5'- gCGAgUCGAGCGUggCguaGAUGAcGAACUCg -3' miRNA: 3'- -GCU-AGCUCGCG--Gag-CUACUcCUUGAG- -5' |
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16459 | 3' | -53.9 | NC_004084.1 | + | 4976 | 0.67 | 0.749275 |
Target: 5'- ----aGAGCGCCUCGGaaGGGAccuuucgucGCUCg -3' miRNA: 3'- gcuagCUCGCGGAGCUacUCCU---------UGAG- -5' |
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16459 | 3' | -53.9 | NC_004084.1 | + | 5323 | 0.67 | 0.769827 |
Target: 5'- -cGUCGAGUGCCUCcugGAGGucUUCu -3' miRNA: 3'- gcUAGCUCGCGGAGcuaCUCCuuGAG- -5' |
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16459 | 3' | -53.9 | NC_004084.1 | + | 5740 | 0.66 | 0.827705 |
Target: 5'- uCGAUCGGGaugauCGCCUCGAcGAcGAuCUCc -3' miRNA: 3'- -GCUAGCUC-----GCGGAGCUaCUcCUuGAG- -5' |
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16459 | 3' | -53.9 | NC_004084.1 | + | 8676 | 0.72 | 0.469679 |
Target: 5'- gCGAcccacUCGAGCaCCUCGAaGAGGAGacCUCg -3' miRNA: 3'- -GCU-----AGCUCGcGGAGCUaCUCCUU--GAG- -5' |
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16459 | 3' | -53.9 | NC_004084.1 | + | 9920 | 0.67 | 0.769827 |
Target: 5'- aGAcaaGAGCGCCUCGAcGAGc--CUCa -3' miRNA: 3'- gCUag-CUCGCGGAGCUaCUCcuuGAG- -5' |
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16459 | 3' | -53.9 | NC_004084.1 | + | 11394 | 0.69 | 0.656604 |
Target: 5'- aGAUCcgcuuccaccacgcuGAGCGCCaCGAgGAGGAGCa- -3' miRNA: 3'- gCUAG---------------CUCGCGGaGCUaCUCCUUGag -5' |
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16459 | 3' | -53.9 | NC_004084.1 | + | 11406 | 0.67 | 0.749275 |
Target: 5'- uCGAUCGcGaCGuCCUCGA---GGAACUCg -3' miRNA: 3'- -GCUAGCuC-GC-GGAGCUacuCCUUGAG- -5' |
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16459 | 3' | -53.9 | NC_004084.1 | + | 15395 | 0.74 | 0.374944 |
Target: 5'- gGGUCcgcuuGCGUCUCGuUGGGGAACUCc -3' miRNA: 3'- gCUAGcu---CGCGGAGCuACUCCUUGAG- -5' |
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16459 | 3' | -53.9 | NC_004084.1 | + | 15398 | 0.66 | 0.827705 |
Target: 5'- aGAguucugaGGGCGUCUCGA-GAGGAuuugAUUCg -3' miRNA: 3'- gCUag-----CUCGCGGAGCUaCUCCU----UGAG- -5' |
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16459 | 3' | -53.9 | NC_004084.1 | + | 16099 | 0.66 | 0.827705 |
Target: 5'- aGAcCGAGCGCCUCgcaGAUGAGuauGC-Cg -3' miRNA: 3'- gCUaGCUCGCGGAG---CUACUCcu-UGaG- -5' |
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16459 | 3' | -53.9 | NC_004084.1 | + | 16350 | 0.69 | 0.652199 |
Target: 5'- gCGA-CGAGuUGCUUCGcGUGGuGGAGCUCg -3' miRNA: 3'- -GCUaGCUC-GCGGAGC-UACU-CCUUGAG- -5' |
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16459 | 3' | -53.9 | NC_004084.1 | + | 16684 | 0.66 | 0.826795 |
Target: 5'- cCGAagCGGG-GCCUCGAcguUGgucgcgaucguccAGGAACUCa -3' miRNA: 3'- -GCUa-GCUCgCGGAGCU---AC-------------UCCUUGAG- -5' |
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16459 | 3' | -53.9 | NC_004084.1 | + | 18937 | 0.67 | 0.728245 |
Target: 5'- gGAUCGAGgGCCUUGuUGGccuccucaucGGcGCUCg -3' miRNA: 3'- gCUAGCUCgCGGAGCuACU----------CCuUGAG- -5' |
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16459 | 3' | -53.9 | NC_004084.1 | + | 20390 | 0.68 | 0.706829 |
Target: 5'- --uUCGAGgaUGCCUCuGGUGAGGcGCUUg -3' miRNA: 3'- gcuAGCUC--GCGGAG-CUACUCCuUGAG- -5' |
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16459 | 3' | -53.9 | NC_004084.1 | + | 20630 | 0.71 | 0.504589 |
Target: 5'- uCGAUCGAagcccggaaagccugGCagguugaCCUCGAUGAGGAgugGCUCg -3' miRNA: 3'- -GCUAGCU---------------CGc------GGAGCUACUCCU---UGAG- -5' |
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16459 | 3' | -53.9 | NC_004084.1 | + | 22152 | 0.69 | 0.630141 |
Target: 5'- uGAccgCGAGCGCCUCGGcgcacucGAGGAcgUCg -3' miRNA: 3'- gCUa--GCUCGCGGAGCUa------CUCCUugAG- -5' |
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16459 | 3' | -53.9 | NC_004084.1 | + | 23205 | 0.7 | 0.56431 |
Target: 5'- gCGAUCGu-CGgCUCGAUcccgacgauucgGAGGAGCUCg -3' miRNA: 3'- -GCUAGCucGCgGAGCUA------------CUCCUUGAG- -5' |
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16459 | 3' | -53.9 | NC_004084.1 | + | 26039 | 0.67 | 0.769827 |
Target: 5'- uCGAUCGAGCGgagcugCUUGAaGAGaAGCUCg -3' miRNA: 3'- -GCUAGCUCGCg-----GAGCUaCUCcUUGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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