miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16459 3' -53.9 NC_004084.1 + 16099 0.66 0.827705
Target:  5'- aGAcCGAGCGCCUCgcaGAUGAGuauGC-Cg -3'
miRNA:   3'- gCUaGCUCGCGGAG---CUACUCcu-UGaG- -5'
16459 3' -53.9 NC_004084.1 + 20390 0.68 0.706829
Target:  5'- --uUCGAGgaUGCCUCuGGUGAGGcGCUUg -3'
miRNA:   3'- gcuAGCUC--GCGGAG-CUACUCCuUGAG- -5'
16459 3' -53.9 NC_004084.1 + 4976 0.67 0.749275
Target:  5'- ----aGAGCGCCUCGGaaGGGAccuuucgucGCUCg -3'
miRNA:   3'- gcuagCUCGCGGAGCUacUCCU---------UGAG- -5'
16459 3' -53.9 NC_004084.1 + 9920 0.67 0.769827
Target:  5'- aGAcaaGAGCGCCUCGAcGAGc--CUCa -3'
miRNA:   3'- gCUag-CUCGCGGAGCUaCUCcuuGAG- -5'
16459 3' -53.9 NC_004084.1 + 39464 0.66 0.789808
Target:  5'- gGcgCGAGCGCCgaUCGAgGAGGccAACa- -3'
miRNA:   3'- gCuaGCUCGCGG--AGCUaCUCC--UUGag -5'
16459 3' -53.9 NC_004084.1 + 42355 0.66 0.789808
Target:  5'- gGAacUCGAGCGCCaggcCGAgcGGGAGCa- -3'
miRNA:   3'- gCU--AGCUCGCGGa---GCUacUCCUUGag -5'
16459 3' -53.9 NC_004084.1 + 56314 0.66 0.799557
Target:  5'- -cAUCGAgggcaugucccaGCGCCUCGA-GGGuGACUCg -3'
miRNA:   3'- gcUAGCU------------CGCGGAGCUaCUCcUUGAG- -5'
16459 3' -53.9 NC_004084.1 + 16684 0.66 0.826795
Target:  5'- cCGAagCGGG-GCCUCGAcguUGgucgcgaucguccAGGAACUCa -3'
miRNA:   3'- -GCUa-GCUCgCGGAGCU---AC-------------UCCUUGAG- -5'
16459 3' -53.9 NC_004084.1 + 15398 0.66 0.827705
Target:  5'- aGAguucugaGGGCGUCUCGA-GAGGAuuugAUUCg -3'
miRNA:   3'- gCUag-----CUCGCGGAGCUaCUCCU----UGAG- -5'
16459 3' -53.9 NC_004084.1 + 52220 0.68 0.696005
Target:  5'- uCGGUCucGCgaGCCUCGAUcGAGacGAGCUCg -3'
miRNA:   3'- -GCUAGcuCG--CGGAGCUA-CUC--CUUGAG- -5'
16459 3' -53.9 NC_004084.1 + 34661 0.68 0.674182
Target:  5'- uGAUaaCGuuuGCGCCUCGGUGAGaGGCgUCa -3'
miRNA:   3'- gCUA--GCu--CGCGGAGCUACUCcUUG-AG- -5'
16459 3' -53.9 NC_004084.1 + 39639 0.69 0.663205
Target:  5'- uCGAUCGuaCGCgaCGccGAGGAACUCg -3'
miRNA:   3'- -GCUAGCucGCGgaGCuaCUCCUUGAG- -5'
16459 3' -53.9 NC_004084.1 + 30030 0.74 0.340839
Target:  5'- cCGAUCGAG-GUCUCGcgGGGGccGCUCg -3'
miRNA:   3'- -GCUAGCUCgCGGAGCuaCUCCu-UGAG- -5'
16459 3' -53.9 NC_004084.1 + 51093 0.74 0.357606
Target:  5'- gCGAUCGaAGU-CCUCGAgcagcgaGAGGAGCUCg -3'
miRNA:   3'- -GCUAGC-UCGcGGAGCUa------CUCCUUGAG- -5'
16459 3' -53.9 NC_004084.1 + 8676 0.72 0.469679
Target:  5'- gCGAcccacUCGAGCaCCUCGAaGAGGAGacCUCg -3'
miRNA:   3'- -GCU-----AGCUCGcGGAGCUaCUCCUU--GAG- -5'
16459 3' -53.9 NC_004084.1 + 20630 0.71 0.504589
Target:  5'- uCGAUCGAagcccggaaagccugGCagguugaCCUCGAUGAGGAgugGCUCg -3'
miRNA:   3'- -GCUAGCU---------------CGc------GGAGCUACUCCU---UGAG- -5'
16459 3' -53.9 NC_004084.1 + 46727 0.7 0.553482
Target:  5'- uGGUCGGGCGagcacaUCGAucuUGAGGAGgUCg -3'
miRNA:   3'- gCUAGCUCGCgg----AGCU---ACUCCUUgAG- -5'
16459 3' -53.9 NC_004084.1 + 41745 0.7 0.575193
Target:  5'- aCGAUCGGGacgaCGCCggCGAcGAGGAcCUCc -3'
miRNA:   3'- -GCUAGCUC----GCGGa-GCUaCUCCUuGAG- -5'
16459 3' -53.9 NC_004084.1 + 22152 0.69 0.630141
Target:  5'- uGAccgCGAGCGCCUCGGcgcacucGAGGAcgUCg -3'
miRNA:   3'- gCUa--GCUCGCGGAGCUa------CUCCUugAG- -5'
16459 3' -53.9 NC_004084.1 + 11394 0.69 0.656604
Target:  5'- aGAUCcgcuuccaccacgcuGAGCGCCaCGAgGAGGAGCa- -3'
miRNA:   3'- gCUAG---------------CUCGCGGaGCUaCUCCUUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.