miRNA display CGI


Results 1 - 20 of 34 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16459 5' -54.7 NC_004084.1 + 645 0.69 0.583026
Target:  5'- uGGAGcUCCUCGACGGcgucGugGUAGGUGu -3'
miRNA:   3'- uCCUCaAGGGGUUGCU----CugCGUUCGC- -5'
16459 5' -54.7 NC_004084.1 + 3016 0.68 0.615896
Target:  5'- cGGGAcagcgUCCCCGACGuGGCGaauacGGCGa -3'
miRNA:   3'- -UCCUca---AGGGGUUGCuCUGCgu---UCGC- -5'
16459 5' -54.7 NC_004084.1 + 3108 0.73 0.37826
Target:  5'- -uGAGUUCCUCGAUGAGAgggaguucucugaGCAAGCGa -3'
miRNA:   3'- ucCUCAAGGGGUUGCUCUg------------CGUUCGC- -5'
16459 5' -54.7 NC_004084.1 + 3390 0.74 0.339099
Target:  5'- cGGAGcUCCUcgagcaCAACGAGACGCAcGCa -3'
miRNA:   3'- uCCUCaAGGG------GUUGCUCUGCGUuCGc -5'
16459 5' -54.7 NC_004084.1 + 3489 0.76 0.226361
Target:  5'- cGGAGgaUCCCGAuCGAGACGgCGAGCa -3'
miRNA:   3'- uCCUCaaGGGGUU-GCUCUGC-GUUCGc -5'
16459 5' -54.7 NC_004084.1 + 4369 0.7 0.52916
Target:  5'- aAGGAGUUCgCUGAgGAGACGauccagccCAAGCa -3'
miRNA:   3'- -UCCUCAAGgGGUUgCUCUGC--------GUUCGc -5'
16459 5' -54.7 NC_004084.1 + 4909 0.68 0.615896
Target:  5'- gAGGAGUUCCUCGAgcacuacguCGAGGgGCuccAGCc -3'
miRNA:   3'- -UCCUCAAGGGGUU---------GCUCUgCGu--UCGc -5'
16459 5' -54.7 NC_004084.1 + 10221 0.78 0.178058
Target:  5'- gAGGAGUUCCUUgaguACGAG-CGCGAGCa -3'
miRNA:   3'- -UCCUCAAGGGGu---UGCUCuGCGUUCGc -5'
16459 5' -54.7 NC_004084.1 + 12241 0.66 0.776545
Target:  5'- gAGGAGUUCUCCGGuCGuAG-UGUAgcGGCGa -3'
miRNA:   3'- -UCCUCAAGGGGUU-GC-UCuGCGU--UCGC- -5'
16459 5' -54.7 NC_004084.1 + 13182 0.66 0.745879
Target:  5'- cAGGGGUUCUCCGgauCGAGAUcCAGGa- -3'
miRNA:   3'- -UCCUCAAGGGGUu--GCUCUGcGUUCgc -5'
16459 5' -54.7 NC_004084.1 + 14275 0.67 0.724841
Target:  5'- uGGAGgUCCUCGuCGu--CGCGAGCGg -3'
miRNA:   3'- uCCUCaAGGGGUuGCucuGCGUUCGC- -5'
16459 5' -54.7 NC_004084.1 + 15435 0.71 0.447309
Target:  5'- -cGAGUUCCUCAuCGAGGCGCucgaucGCGu -3'
miRNA:   3'- ucCUCAAGGGGUuGCUCUGCGuu----CGC- -5'
16459 5' -54.7 NC_004084.1 + 16847 0.68 0.670829
Target:  5'- cGGGAGaUCCCguCGAUGAu-CGCAAGUGg -3'
miRNA:   3'- -UCCUCaAGGG--GUUGCUcuGCGUUCGC- -5'
16459 5' -54.7 NC_004084.1 + 17893 0.69 0.604913
Target:  5'- --aGGUagUCCAACGAGAacaGCGAGCGg -3'
miRNA:   3'- uccUCAagGGGUUGCUCUg--CGUUCGC- -5'
16459 5' -54.7 NC_004084.1 + 22593 0.66 0.735412
Target:  5'- -cGAcgUCgCCGACGAGACGguGGUGa -3'
miRNA:   3'- ucCUcaAGgGGUUGCUCUGCguUCGC- -5'
16459 5' -54.7 NC_004084.1 + 23156 0.66 0.776545
Target:  5'- gAGGAcUUCCCCcuCGGGACG-GAGUu -3'
miRNA:   3'- -UCCUcAAGGGGuuGCUCUGCgUUCGc -5'
16459 5' -54.7 NC_004084.1 + 24007 0.67 0.703434
Target:  5'- uGGGGGcUCCCagaCGGCGAugGACGCGguuGCGg -3'
miRNA:   3'- -UCCUCaAGGG---GUUGCU--CUGCGUu--CGC- -5'
16459 5' -54.7 NC_004084.1 + 24012 0.66 0.745879
Target:  5'- aAGGAGaUCCgCGGCGuaguugcgugGGA-GCAAGCGg -3'
miRNA:   3'- -UCCUCaAGGgGUUGC----------UCUgCGUUCGC- -5'
16459 5' -54.7 NC_004084.1 + 27960 0.7 0.518593
Target:  5'- cGGGGUUCaCCC-ACcAGACGCGuGCGu -3'
miRNA:   3'- uCCUCAAG-GGGuUGcUCUGCGUuCGC- -5'
16459 5' -54.7 NC_004084.1 + 27966 0.71 0.467145
Target:  5'- gAGGAacgUCCCCAGCGGGACGUc---- -3'
miRNA:   3'- -UCCUca-AGGGGUUGCUCUGCGuucgc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.