Results 1 - 20 of 34 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16459 | 5' | -54.7 | NC_004084.1 | + | 43015 | 1.1 | 0.001077 |
Target: 5'- gAGGAGUUCCCCAACGAGACGCAAGCGg -3' miRNA: 3'- -UCCUCAAGGGGUUGCUCUGCGUUCGC- -5' |
|||||||
16459 | 5' | -54.7 | NC_004084.1 | + | 51629 | 0.68 | 0.615896 |
Target: 5'- cGGGAGcugaUCCCCGACGucuucGGCGUuccgcaggAGGCGa -3' miRNA: 3'- -UCCUCa---AGGGGUUGCu----CUGCG--------UUCGC- -5' |
|||||||
16459 | 5' | -54.7 | NC_004084.1 | + | 57305 | 0.68 | 0.637895 |
Target: 5'- cAGGAccUCCUCGACGAggggGACGCcuacaAAGCGg -3' miRNA: 3'- -UCCUcaAGGGGUUGCU----CUGCG-----UUCGC- -5' |
|||||||
16459 | 5' | -54.7 | NC_004084.1 | + | 16847 | 0.68 | 0.670829 |
Target: 5'- cGGGAGaUCCCguCGAUGAu-CGCAAGUGg -3' miRNA: 3'- -UCCUCaAGGG--GUUGCUcuGCGUUCGC- -5' |
|||||||
16459 | 5' | -54.7 | NC_004084.1 | + | 54750 | 0.67 | 0.69262 |
Target: 5'- gAGGAGUUCCUCGACGccaAGcccaaccccCGCcAGCGc -3' miRNA: 3'- -UCCUCAAGGGGUUGC---UCu--------GCGuUCGC- -5' |
|||||||
16459 | 5' | -54.7 | NC_004084.1 | + | 24007 | 0.67 | 0.703434 |
Target: 5'- uGGGGGcUCCCagaCGGCGAugGACGCGguuGCGg -3' miRNA: 3'- -UCCUCaAGGG---GUUGCU--CUGCGUu--CGC- -5' |
|||||||
16459 | 5' | -54.7 | NC_004084.1 | + | 22593 | 0.66 | 0.735412 |
Target: 5'- -cGAcgUCgCCGACGAGACGguGGUGa -3' miRNA: 3'- ucCUcaAGgGGUUGCUCUGCguUCGC- -5' |
|||||||
16459 | 5' | -54.7 | NC_004084.1 | + | 43747 | 0.66 | 0.766457 |
Target: 5'- -cGAGga-CCCGGcCGGGACGCucGCGg -3' miRNA: 3'- ucCUCaagGGGUU-GCUCUGCGuuCGC- -5' |
|||||||
16459 | 5' | -54.7 | NC_004084.1 | + | 23156 | 0.66 | 0.776545 |
Target: 5'- gAGGAcUUCCCCcuCGGGACG-GAGUu -3' miRNA: 3'- -UCCUcAAGGGGuuGCUCUGCgUUCGc -5' |
|||||||
16459 | 5' | -54.7 | NC_004084.1 | + | 4909 | 0.68 | 0.615896 |
Target: 5'- gAGGAGUUCCUCGAgcacuacguCGAGGgGCuccAGCc -3' miRNA: 3'- -UCCUCAAGGGGUU---------GCUCUgCGu--UCGc -5' |
|||||||
16459 | 5' | -54.7 | NC_004084.1 | + | 3016 | 0.68 | 0.615896 |
Target: 5'- cGGGAcagcgUCCCCGACGuGGCGaauacGGCGa -3' miRNA: 3'- -UCCUca---AGGGGUUGCuCUGCgu---UCGC- -5' |
|||||||
16459 | 5' | -54.7 | NC_004084.1 | + | 4369 | 0.7 | 0.52916 |
Target: 5'- aAGGAGUUCgCUGAgGAGACGauccagccCAAGCa -3' miRNA: 3'- -UCCUCAAGgGGUUgCUCUGC--------GUUCGc -5' |
|||||||
16459 | 5' | -54.7 | NC_004084.1 | + | 10221 | 0.78 | 0.178058 |
Target: 5'- gAGGAGUUCCUUgaguACGAG-CGCGAGCa -3' miRNA: 3'- -UCCUCAAGGGGu---UGCUCuGCGUUCGc -5' |
|||||||
16459 | 5' | -54.7 | NC_004084.1 | + | 51677 | 0.77 | 0.198286 |
Target: 5'- gAGGAGUUCCCCuACGGGACGUc---- -3' miRNA: 3'- -UCCUCAAGGGGuUGCUCUGCGuucgc -5' |
|||||||
16459 | 5' | -54.7 | NC_004084.1 | + | 3489 | 0.76 | 0.226361 |
Target: 5'- cGGAGgaUCCCGAuCGAGACGgCGAGCa -3' miRNA: 3'- uCCUCaaGGGGUU-GCUCUGC-GUUCGc -5' |
|||||||
16459 | 5' | -54.7 | NC_004084.1 | + | 28874 | 0.74 | 0.339099 |
Target: 5'- uGGGcGUUCCgCAGCGAGAucucgcCGCGGGUGg -3' miRNA: 3'- -UCCuCAAGGgGUUGCUCU------GCGUUCGC- -5' |
|||||||
16459 | 5' | -54.7 | NC_004084.1 | + | 3390 | 0.74 | 0.339099 |
Target: 5'- cGGAGcUCCUcgagcaCAACGAGACGCAcGCa -3' miRNA: 3'- uCCUCaAGGG------GUUGCUCUGCGUuCGc -5' |
|||||||
16459 | 5' | -54.7 | NC_004084.1 | + | 30463 | 0.73 | 0.381806 |
Target: 5'- gGGGAcGUUCCUCuACGAGGCGCu-GCc -3' miRNA: 3'- -UCCU-CAAGGGGuUGCUCUGCGuuCGc -5' |
|||||||
16459 | 5' | -54.7 | NC_004084.1 | + | 57787 | 0.7 | 0.49772 |
Target: 5'- gAGGAGcUCCaCGACGAGAuCGCcAGCu -3' miRNA: 3'- -UCCUCaAGGgGUUGCUCU-GCGuUCGc -5' |
|||||||
16459 | 5' | -54.7 | NC_004084.1 | + | 27960 | 0.7 | 0.518593 |
Target: 5'- cGGGGUUCaCCC-ACcAGACGCGuGCGu -3' miRNA: 3'- uCCUCAAG-GGGuUGcUCUGCGUuCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home