miRNA display CGI


Results 21 - 40 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16466 5' -59.7 NC_004084.1 + 19916 0.71 0.269843
Target:  5'- aACGauGCUCGCGAcGAUCGAGGgCGAg -3'
miRNA:   3'- cUGCggCGGGCGCU-CUAGCUUCgGCU- -5'
16466 5' -59.7 NC_004084.1 + 21605 0.69 0.333983
Target:  5'- cGGCGUucgucgaCGCUCGuCGAGAaCGAAGUCGAg -3'
miRNA:   3'- -CUGCG-------GCGGGC-GCUCUaGCUUCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 21760 0.73 0.184638
Target:  5'- cGAUGCUGCCgaUGuCGAGAUCGAggAGCCGu -3'
miRNA:   3'- -CUGCGGCGG--GC-GCUCUAGCU--UCGGCu -5'
16466 5' -59.7 NC_004084.1 + 22317 0.67 0.447247
Target:  5'- uACGCCGCCggacgaagaCGaCGAGGaacUCGAGGgCGAg -3'
miRNA:   3'- cUGCGGCGG---------GC-GCUCU---AGCUUCgGCU- -5'
16466 5' -59.7 NC_004084.1 + 22865 0.67 0.43786
Target:  5'- cGACGaacCCCGUGAGAucacacUCGAGGCCa- -3'
miRNA:   3'- -CUGCggcGGGCGCUCU------AGCUUCGGcu -5'
16466 5' -59.7 NC_004084.1 + 25025 0.66 0.526001
Target:  5'- --aGCCGCCCGauccagagGAGAUCGcauCCGAu -3'
miRNA:   3'- cugCGGCGGGCg-------CUCUAGCuucGGCU- -5'
16466 5' -59.7 NC_004084.1 + 26284 0.73 0.184638
Target:  5'- -gUGCCGCUCGCGAGGUCu--GUCGAc -3'
miRNA:   3'- cuGCGGCGGGCGCUCUAGcuuCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 26422 0.66 0.515842
Target:  5'- cGCGUgGCCCuGCG-GAUCcAGGUCGAu -3'
miRNA:   3'- cUGCGgCGGG-CGCuCUAGcUUCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 27830 0.73 0.194453
Target:  5'- cGCGgCGUCCGCGAGGUCacggacGAGCUGAa -3'
miRNA:   3'- cUGCgGCGGGCGCUCUAGc-----UUCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 28420 0.7 0.297365
Target:  5'- uGACGUCGUCaccaGCGAccaGGUCGAcGCCGGu -3'
miRNA:   3'- -CUGCGGCGGg---CGCU---CUAGCUuCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 28773 0.7 0.297365
Target:  5'- --aGCUGUCCGCGcGGUCGucgacguccgGAGCCGAc -3'
miRNA:   3'- cugCGGCGGGCGCuCUAGC----------UUCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 28889 0.73 0.20472
Target:  5'- cGGCGCgucacCGgCCGCGcGAUCGAGGCUGGc -3'
miRNA:   3'- -CUGCG-----GCgGGCGCuCUAGCUUCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 29067 0.68 0.419431
Target:  5'- cGCGaCCGCCCGCucggGGGcGUCGucGCCGc -3'
miRNA:   3'- cUGC-GGCGGGCG----CUC-UAGCuuCGGCu -5'
16466 5' -59.7 NC_004084.1 + 29288 0.66 0.49577
Target:  5'- -cCGCCGacaCCGcCGAGGagGAGGCCu- -3'
miRNA:   3'- cuGCGGCg--GGC-GCUCUagCUUCGGcu -5'
16466 5' -59.7 NC_004084.1 + 29479 0.67 0.43786
Target:  5'- cGACGCUGUCgaCGCGcucccCGAGGCCGAc -3'
miRNA:   3'- -CUGCGGCGG--GCGCucua-GCUUCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 30046 0.66 0.485867
Target:  5'- gGGgGCCGCUCGCGucguugugccAGccGUCGAGGCUGc -3'
miRNA:   3'- -CUgCGGCGGGCGC----------UC--UAGCUUCGGCu -5'
16466 5' -59.7 NC_004084.1 + 30125 0.76 0.126446
Target:  5'- -uCGCCGCCCcgaucGCGAGAcucccguccacgagUCGAAGCCGc -3'
miRNA:   3'- cuGCGGCGGG-----CGCUCU--------------AGCUUCGGCu -5'
16466 5' -59.7 NC_004084.1 + 30231 0.68 0.40148
Target:  5'- aGGCGauGUCCGCGGcGAcgUCGAacaGGCCGAg -3'
miRNA:   3'- -CUGCggCGGGCGCU-CU--AGCU---UCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 30480 0.71 0.269843
Target:  5'- aGGCGCUGCCgGacucCGAGAUCGAuucGGuuGAa -3'
miRNA:   3'- -CUGCGGCGGgC----GCUCUAGCU---UCggCU- -5'
16466 5' -59.7 NC_004084.1 + 32421 0.69 0.366247
Target:  5'- cGACGa-GCUCGCacucgucgcgaacGAGGUCGAGGUCGAu -3'
miRNA:   3'- -CUGCggCGGGCG-------------CUCUAGCUUCGGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.