miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16466 5' -59.7 NC_004084.1 + 792 0.66 0.515842
Target:  5'- cGACGCgCGaCCuCGAGA-CGAAGCgCGAa -3'
miRNA:   3'- -CUGCG-GCgGGcGCUCUaGCUUCG-GCU- -5'
16466 5' -59.7 NC_004084.1 + 1213 0.68 0.40148
Target:  5'- aACGCUGgCUggcucggcgGCGGGAUCGAGGgCGAu -3'
miRNA:   3'- cUGCGGCgGG---------CGCUCUAGCUUCgGCU- -5'
16466 5' -59.7 NC_004084.1 + 1500 0.85 0.024599
Target:  5'- aGACGUCGCCCuCGAGcUCGAAGCCGAu -3'
miRNA:   3'- -CUGCGGCGGGcGCUCuAGCUUCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 1593 0.7 0.299515
Target:  5'- cGACGUCGCCCGgcUGGGAgcucugcUCGAugaacuccucgaggaGGCCGAc -3'
miRNA:   3'- -CUGCGGCGGGC--GCUCU-------AGCU---------------UCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 2054 0.67 0.447247
Target:  5'- cGAUGCCGUacgguggauCCGUGAGGaCGAGGUCa- -3'
miRNA:   3'- -CUGCGGCG---------GGCGCUCUaGCUUCGGcu -5'
16466 5' -59.7 NC_004084.1 + 5151 0.68 0.384025
Target:  5'- gGACGUCGCCCGgccCGAucUCGucGCCGu -3'
miRNA:   3'- -CUGCGGCGGGC---GCUcuAGCuuCGGCu -5'
16466 5' -59.7 NC_004084.1 + 5480 0.66 0.515842
Target:  5'- cGACGCCGaCgGCcAGAUCGucgcAGUCGAc -3'
miRNA:   3'- -CUGCGGCgGgCGcUCUAGCu---UCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 6208 0.68 0.40148
Target:  5'- cGAUGauCUGCCCGaCGAGGUCGAGauuCCGGa -3'
miRNA:   3'- -CUGC--GGCGGGC-GCUCUAGCUUc--GGCU- -5'
16466 5' -59.7 NC_004084.1 + 7432 0.68 0.375488
Target:  5'- cGAUGCCGacggUgGCGAGAccUCGGAGuCCGAc -3'
miRNA:   3'- -CUGCGGCg---GgCGCUCU--AGCUUC-GGCU- -5'
16466 5' -59.7 NC_004084.1 + 8434 0.69 0.327017
Target:  5'- uACGCaucaccagCGUCCGCGAGA-CGAGucGCCGAg -3'
miRNA:   3'- cUGCG--------GCGGGCGCUCUaGCUU--CGGCU- -5'
16466 5' -59.7 NC_004084.1 + 9501 0.68 0.384025
Target:  5'- cGGCGCCGaCCG-GAaGUCGuGGCCGAc -3'
miRNA:   3'- -CUGCGGCgGGCgCUcUAGCuUCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 9889 0.68 0.40148
Target:  5'- aACcCUGCCCGggagaaccCGAGAUCGAAcccGCCGAu -3'
miRNA:   3'- cUGcGGCGGGC--------GCUCUAGCUU---CGGCU- -5'
16466 5' -59.7 NC_004084.1 + 10369 0.7 0.319403
Target:  5'- aGCGCCGUCCGgaUGAGuUCGAcGUCGAg -3'
miRNA:   3'- cUGCGGCGGGC--GCUCuAGCUuCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 10915 0.67 0.43786
Target:  5'- aGGCGCUGCCaCuCGAGGgccUCGAGGUCa- -3'
miRNA:   3'- -CUGCGGCGG-GcGCUCU---AGCUUCGGcu -5'
16466 5' -59.7 NC_004084.1 + 11727 0.66 0.526001
Target:  5'- aGACGUCGCCgGCGAcGugcUCGAAucGCgGAc -3'
miRNA:   3'- -CUGCGGCGGgCGCU-Cu--AGCUU--CGgCU- -5'
16466 5' -59.7 NC_004084.1 + 11932 0.68 0.375488
Target:  5'- cGACGUCGCgaCCaGCGAGGacUCGAucgAGCUGAc -3'
miRNA:   3'- -CUGCGGCG--GG-CGCUCU--AGCU---UCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 14654 0.72 0.226668
Target:  5'- aGCGCCcagucgauGCCCGCGAGcGUCccGGCCGGg -3'
miRNA:   3'- cUGCGG--------CGGGCGCUC-UAGcuUCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 16653 0.75 0.145717
Target:  5'- cGACGUCGUCCGgGAGGuccUCGucGCCGGc -3'
miRNA:   3'- -CUGCGGCGGGCgCUCU---AGCuuCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 17159 0.72 0.215455
Target:  5'- gGACGaUCGCCgGCGAcGUCGAAGgCGAg -3'
miRNA:   3'- -CUGC-GGCGGgCGCUcUAGCUUCgGCU- -5'
16466 5' -59.7 NC_004084.1 + 18148 0.68 0.419431
Target:  5'- cGACGUCGCCgGCGAGuggacgaUGGAGaUCGAg -3'
miRNA:   3'- -CUGCGGCGGgCGCUCua-----GCUUC-GGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.