miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16466 5' -59.7 NC_004084.1 + 6208 0.68 0.40148
Target:  5'- cGAUGauCUGCCCGaCGAGGUCGAGauuCCGGa -3'
miRNA:   3'- -CUGC--GGCGGGC-GCUCUAGCUUc--GGCU- -5'
16466 5' -59.7 NC_004084.1 + 51185 0.7 0.319403
Target:  5'- cGCGCCGaUCGuCGAGGUCGgcGCUGGc -3'
miRNA:   3'- cUGCGGCgGGC-GCUCUAGCuuCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 40432 0.69 0.334764
Target:  5'- --aGCUGUU--CGAGAUCGAGGCCGAg -3'
miRNA:   3'- cugCGGCGGgcGCUCUAGCUUCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 51325 0.69 0.342644
Target:  5'- aGGCGaucgagugCGCCCGCGAGAUCuucGUCGAc -3'
miRNA:   3'- -CUGCg-------GCGGGCGCUCUAGcuuCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 32421 0.69 0.366247
Target:  5'- cGACGa-GCUCGCacucgucgcgaacGAGGUCGAGGUCGAu -3'
miRNA:   3'- -CUGCggCGGGCG-------------CUCUAGCUUCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 11932 0.68 0.375488
Target:  5'- cGACGUCGCgaCCaGCGAGGacUCGAucgAGCUGAc -3'
miRNA:   3'- -CUGCGGCG--GG-CGCUCU--AGCU---UCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 7432 0.68 0.375488
Target:  5'- cGAUGCCGacggUgGCGAGAccUCGGAGuCCGAc -3'
miRNA:   3'- -CUGCGGCg---GgCGCUCU--AGCUUC-GGCU- -5'
16466 5' -59.7 NC_004084.1 + 9501 0.68 0.384025
Target:  5'- cGGCGCCGaCCG-GAaGUCGuGGCCGAc -3'
miRNA:   3'- -CUGCGGCgGGCgCUcUAGCuUCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 1213 0.68 0.40148
Target:  5'- aACGCUGgCUggcucggcgGCGGGAUCGAGGgCGAu -3'
miRNA:   3'- cUGCGGCgGG---------CGCUCUAGCUUCgGCU- -5'
16466 5' -59.7 NC_004084.1 + 28420 0.7 0.297365
Target:  5'- uGACGUCGUCaccaGCGAccaGGUCGAcGCCGGu -3'
miRNA:   3'- -CUGCGGCGGg---CGCU---CUAGCUuCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 28773 0.7 0.297365
Target:  5'- --aGCUGUCCGCGcGGUCGucgacguccgGAGCCGAc -3'
miRNA:   3'- cugCGGCGGGCGCuCUAGC----------UUCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 30480 0.71 0.269843
Target:  5'- aGGCGCUGCCgGacucCGAGAUCGAuucGGuuGAa -3'
miRNA:   3'- -CUGCGGCGGgC----GCUCUAGCU---UCggCU- -5'
16466 5' -59.7 NC_004084.1 + 57412 0.79 0.069783
Target:  5'- cGACGUCGCCgGCGAGcUCGAGGUgGAc -3'
miRNA:   3'- -CUGCGGCGGgCGCUCuAGCUUCGgCU- -5'
16466 5' -59.7 NC_004084.1 + 36946 0.75 0.141886
Target:  5'- cGAuCGCCGCCCuCGAGggCGA-GCCGGu -3'
miRNA:   3'- -CU-GCGGCGGGcGCUCuaGCUuCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 36162 0.74 0.170737
Target:  5'- uGACGCCGCauuCCGCGAGAUCuucaccguuGAAGCguuCGAc -3'
miRNA:   3'- -CUGCGGCG---GGCGCUCUAG---------CUUCG---GCU- -5'
16466 5' -59.7 NC_004084.1 + 26284 0.73 0.184638
Target:  5'- -gUGCCGCUCGCGAGGUCu--GUCGAc -3'
miRNA:   3'- cuGCGGCGGGCGCUCUAGcuuCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 21760 0.73 0.184638
Target:  5'- cGAUGCUGCCgaUGuCGAGAUCGAggAGCCGu -3'
miRNA:   3'- -CUGCGGCGG--GC-GCUCUAGCU--UCGGCu -5'
16466 5' -59.7 NC_004084.1 + 27830 0.73 0.194453
Target:  5'- cGCGgCGUCCGCGAGGUCacggacGAGCUGAa -3'
miRNA:   3'- cUGCgGCGGGCGCUCUAGc-----UUCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 17159 0.72 0.215455
Target:  5'- gGACGaUCGCCgGCGAcGUCGAAGgCGAg -3'
miRNA:   3'- -CUGC-GGCGGgCGCUcUAGCUUCgGCU- -5'
16466 5' -59.7 NC_004084.1 + 19916 0.71 0.269843
Target:  5'- aACGauGCUCGCGAcGAUCGAGGgCGAg -3'
miRNA:   3'- cUGCggCGGGCGCU-CUAGCUUCgGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.