miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16466 5' -59.7 NC_004084.1 + 45453 1.08 0.000509
Target:  5'- uGACGCCGCCCGCGAGAUCGAAGCCGAg -3'
miRNA:   3'- -CUGCGGCGGGCGCUCUAGCUUCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 32952 0.87 0.019584
Target:  5'- uGACGCCGCCCGCGAaccUCGAAGCCa- -3'
miRNA:   3'- -CUGCGGCGGGCGCUcu-AGCUUCGGcu -5'
16466 5' -59.7 NC_004084.1 + 1500 0.85 0.024599
Target:  5'- aGACGUCGCCCuCGAGcUCGAAGCCGAu -3'
miRNA:   3'- -CUGCGGCGGGcGCUCuAGCUUCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 57412 0.79 0.069783
Target:  5'- cGACGUCGCCgGCGAGcUCGAGGUgGAc -3'
miRNA:   3'- -CUGCGGCGGgCGCUCuAGCUUCGgCU- -5'
16466 5' -59.7 NC_004084.1 + 30125 0.76 0.126446
Target:  5'- -uCGCCGCCCcgaucGCGAGAcucccguccacgagUCGAAGCCGc -3'
miRNA:   3'- cuGCGGCGGG-----CGCUCU--------------AGCUUCGGCu -5'
16466 5' -59.7 NC_004084.1 + 36946 0.75 0.141886
Target:  5'- cGAuCGCCGCCCuCGAGggCGA-GCCGGu -3'
miRNA:   3'- -CU-GCGGCGGGcGCUCuaGCUuCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 16653 0.75 0.145717
Target:  5'- cGACGUCGUCCGgGAGGuccUCGucGCCGGc -3'
miRNA:   3'- -CUGCGGCGGGCgCUCU---AGCuuCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 54253 0.74 0.153661
Target:  5'- aGCGCCGUCgGCGAGGUUGAGGUa-- -3'
miRNA:   3'- cUGCGGCGGgCGCUCUAGCUUCGgcu -5'
16466 5' -59.7 NC_004084.1 + 36162 0.74 0.170737
Target:  5'- uGACGCCGCauuCCGCGAGAUCuucaccguuGAAGCguuCGAc -3'
miRNA:   3'- -CUGCGGCG---GGCGCUCUAG---------CUUCG---GCU- -5'
16466 5' -59.7 NC_004084.1 + 21760 0.73 0.184638
Target:  5'- cGAUGCUGCCgaUGuCGAGAUCGAggAGCCGu -3'
miRNA:   3'- -CUGCGGCGG--GC-GCUCUAGCU--UCGGCu -5'
16466 5' -59.7 NC_004084.1 + 26284 0.73 0.184638
Target:  5'- -gUGCCGCUCGCGAGGUCu--GUCGAc -3'
miRNA:   3'- cuGCGGCGGGCGCUCUAGcuuCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 27830 0.73 0.194453
Target:  5'- cGCGgCGUCCGCGAGGUCacggacGAGCUGAa -3'
miRNA:   3'- cUGCgGCGGGCGCUCUAGc-----UUCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 28889 0.73 0.20472
Target:  5'- cGGCGCgucacCGgCCGCGcGAUCGAGGCUGGc -3'
miRNA:   3'- -CUGCG-----GCgGGCGCuCUAGCUUCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 17159 0.72 0.215455
Target:  5'- gGACGaUCGCCgGCGAcGUCGAAGgCGAg -3'
miRNA:   3'- -CUGC-GGCGGgCGCUcUAGCUUCgGCU- -5'
16466 5' -59.7 NC_004084.1 + 14654 0.72 0.226668
Target:  5'- aGCGCCcagucgauGCCCGCGAGcGUCccGGCCGGg -3'
miRNA:   3'- cUGCGG--------CGGGCGCUC-UAGcuUCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 30480 0.71 0.269843
Target:  5'- aGGCGCUGCCgGacucCGAGAUCGAuucGGuuGAa -3'
miRNA:   3'- -CUGCGGCGGgC----GCUCUAGCU---UCggCU- -5'
16466 5' -59.7 NC_004084.1 + 19916 0.71 0.269843
Target:  5'- aACGauGCUCGCGAcGAUCGAGGgCGAg -3'
miRNA:   3'- cUGCggCGGGCGCU-CUAGCUUCgGCU- -5'
16466 5' -59.7 NC_004084.1 + 28420 0.7 0.297365
Target:  5'- uGACGUCGUCaccaGCGAccaGGUCGAcGCCGGu -3'
miRNA:   3'- -CUGCGGCGGg---CGCU---CUAGCUuCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 28773 0.7 0.297365
Target:  5'- --aGCUGUCCGCGcGGUCGucgacguccgGAGCCGAc -3'
miRNA:   3'- cugCGGCGGGCGCuCUAGC----------UUCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 1593 0.7 0.299515
Target:  5'- cGACGUCGCCCGgcUGGGAgcucugcUCGAugaacuccucgaggaGGCCGAc -3'
miRNA:   3'- -CUGCGGCGGGC--GCUCU-------AGCU---------------UCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.