miRNA display CGI


Results 41 - 59 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16489 3' -55 NC_004084.1 + 42351 0.7 0.498853
Target:  5'- cGGCGgaaCUCGAGCgccaGGCCgAGCGGGa -3'
miRNA:   3'- -CUGCag-GAGCUUGag--UUGGgUCGCCU- -5'
16489 3' -55 NC_004084.1 + 20037 0.7 0.488591
Target:  5'- --gGUCCUCGGucgccuucccgcGCUCGAUCCGGCGu- -3'
miRNA:   3'- cugCAGGAGCU------------UGAGUUGGGUCGCcu -5'
16489 3' -55 NC_004084.1 + 31980 0.71 0.478429
Target:  5'- cGACGUCCUCGugaUCGACCUGGauccgcaGGGc -3'
miRNA:   3'- -CUGCAGGAGCuugAGUUGGGUCg------CCU- -5'
16489 3' -55 NC_004084.1 + 691 0.71 0.468372
Target:  5'- cGACGUCCUCGAGCggugCAcgcACUguGCGu- -3'
miRNA:   3'- -CUGCAGGAGCUUGa---GU---UGGguCGCcu -5'
16489 3' -55 NC_004084.1 + 12901 0.71 0.467373
Target:  5'- cGGCGUCCUCGGAgUggccgacCGGCCCGGCcaGGu -3'
miRNA:   3'- -CUGCAGGAGCUUgA-------GUUGGGUCG--CCu -5'
16489 3' -55 NC_004084.1 + 17543 0.71 0.448592
Target:  5'- aGGCGUCa-CGAGCgUCGACgaCAGCGGAg -3'
miRNA:   3'- -CUGCAGgaGCUUG-AGUUGg-GUCGCCU- -5'
16489 3' -55 NC_004084.1 + 28137 0.71 0.438876
Target:  5'- uGACGUCCUCGu-CUCGAUacuUCGGCuGGAa -3'
miRNA:   3'- -CUGCAGGAGCuuGAGUUG---GGUCG-CCU- -5'
16489 3' -55 NC_004084.1 + 1308 0.72 0.429282
Target:  5'- gGACGUCCUCG-ACUgGAUCgaGGCGGu -3'
miRNA:   3'- -CUGCAGGAGCuUGAgUUGGg-UCGCCu -5'
16489 3' -55 NC_004084.1 + 18104 0.72 0.423586
Target:  5'- gGACGUCaggUCGAggucggggauguccgGCUCGGCCCGGaUGGAg -3'
miRNA:   3'- -CUGCAGg--AGCU---------------UGAGUUGGGUC-GCCU- -5'
16489 3' -55 NC_004084.1 + 39527 0.72 0.410471
Target:  5'- cGACGUCCUCGAGgaucucCUCGugauGgCCAGCGcGAu -3'
miRNA:   3'- -CUGCAGGAGCUU------GAGU----UgGGUCGC-CU- -5'
16489 3' -55 NC_004084.1 + 26394 0.73 0.356384
Target:  5'- aGAgGUCCUCGAACccgagcccuuccgUCGcgugGCCCuGCGGAu -3'
miRNA:   3'- -CUgCAGGAGCUUG-------------AGU----UGGGuCGCCU- -5'
16489 3' -55 NC_004084.1 + 26019 0.75 0.286846
Target:  5'- cGACGggaCCgaacgCGGACUCGAUCgAGCGGAg -3'
miRNA:   3'- -CUGCa--GGa----GCUUGAGUUGGgUCGCCU- -5'
16489 3' -55 NC_004084.1 + 6693 0.75 0.286846
Target:  5'- cGACGUCCaucUCGAGgUCAACgCCGGCGa- -3'
miRNA:   3'- -CUGCAGG---AGCUUgAGUUG-GGUCGCcu -5'
16489 3' -55 NC_004084.1 + 34814 0.75 0.272769
Target:  5'- uGACG-CUUCGAGCgCAGuuCCCGGCGGAg -3'
miRNA:   3'- -CUGCaGGAGCUUGaGUU--GGGUCGCCU- -5'
16489 3' -55 NC_004084.1 + 2393 0.76 0.246287
Target:  5'- gGACcUCCUCGAGCUCGAUCUccuuGGCGGc -3'
miRNA:   3'- -CUGcAGGAGCUUGAGUUGGG----UCGCCu -5'
16489 3' -55 NC_004084.1 + 5954 0.76 0.240008
Target:  5'- cGGCGUCCaggCGAugUaCAACCCAGCgccGGAg -3'
miRNA:   3'- -CUGCAGGa--GCUugA-GUUGGGUCG---CCU- -5'
16489 3' -55 NC_004084.1 + 27475 0.76 0.221971
Target:  5'- cGGCGUCCUCGAGCUCGACgUcgacgaGGCGa- -3'
miRNA:   3'- -CUGCAGGAGCUUGAGUUGgG------UCGCcu -5'
16489 3' -55 NC_004084.1 + 38897 0.77 0.210598
Target:  5'- aGCGUCUUCGAGCUCGAaCCGGCGu- -3'
miRNA:   3'- cUGCAGGAGCUUGAGUUgGGUCGCcu -5'
16489 3' -55 NC_004084.1 + 52718 1.09 0.001251
Target:  5'- cGACGUCCUCGAACUCAACCCAGCGGAc -3'
miRNA:   3'- -CUGCAGGAGCUUGAGUUGGGUCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.