miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16495 5' -54.5 NC_004084.1 + 51185 0.66 0.791432
Target:  5'- cGCGCCgaucgUCGAgGuCgGCG-CUGGCGCg -3'
miRNA:   3'- -UGCGGa----AGCUgCuGaUGUuGGCCGUG- -5'
16495 5' -54.5 NC_004084.1 + 51756 0.66 0.791432
Target:  5'- aGCGCCgaagCGACuuCUACGGCCuGaCACc -3'
miRNA:   3'- -UGCGGaa--GCUGcuGAUGUUGGcC-GUG- -5'
16495 5' -54.5 NC_004084.1 + 4835 0.66 0.791432
Target:  5'- uCGCCgaucgUCG-CGAgcACAuCCGGCACc -3'
miRNA:   3'- uGCGGa----AGCuGCUgaUGUuGGCCGUG- -5'
16495 5' -54.5 NC_004084.1 + 47383 0.66 0.791432
Target:  5'- cGCGUCgUCGACGGCgagcuCCagGGCGCg -3'
miRNA:   3'- -UGCGGaAGCUGCUGauguuGG--CCGUG- -5'
16495 5' -54.5 NC_004084.1 + 34077 0.66 0.790451
Target:  5'- uUGCCUUCGACGuuagAC-GCCucgugaaGGCACg -3'
miRNA:   3'- uGCGGAAGCUGCuga-UGuUGG-------CCGUG- -5'
16495 5' -54.5 NC_004084.1 + 48844 0.66 0.781552
Target:  5'- uCGCUuucUUCGGCGACU----CCGGUACc -3'
miRNA:   3'- uGCGG---AAGCUGCUGAuguuGGCCGUG- -5'
16495 5' -54.5 NC_004084.1 + 47652 0.66 0.781552
Target:  5'- gGCGUCgaggUCGGCGACgcccCcACUGGCGa -3'
miRNA:   3'- -UGCGGa---AGCUGCUGau--GuUGGCCGUg -5'
16495 5' -54.5 NC_004084.1 + 50884 0.66 0.781552
Target:  5'- gAUGCCguccUgGAUGGCUGCAcccACUcgGGCGCa -3'
miRNA:   3'- -UGCGGa---AgCUGCUGAUGU---UGG--CCGUG- -5'
16495 5' -54.5 NC_004084.1 + 28847 0.66 0.778557
Target:  5'- gACGCCcaccCGGCGAuggcccucaacggcCUGCuuacgcuCCGGCGCg -3'
miRNA:   3'- -UGCGGaa--GCUGCU--------------GAUGuu-----GGCCGUG- -5'
16495 5' -54.5 NC_004084.1 + 2603 0.66 0.771516
Target:  5'- gACGCCgaggugaagUCGACGuauCUGgAuCCGGaCACg -3'
miRNA:   3'- -UGCGGa--------AGCUGCu--GAUgUuGGCC-GUG- -5'
16495 5' -54.5 NC_004084.1 + 28544 0.66 0.771516
Target:  5'- gACGUCUUUGACGACgagAUcACCGcGUggACg -3'
miRNA:   3'- -UGCGGAAGCUGCUGa--UGuUGGC-CG--UG- -5'
16495 5' -54.5 NC_004084.1 + 11042 0.66 0.761336
Target:  5'- uCGCCgUCGACGACgcggACGAaggggCGGC-Cg -3'
miRNA:   3'- uGCGGaAGCUGCUGa---UGUUg----GCCGuG- -5'
16495 5' -54.5 NC_004084.1 + 22510 0.66 0.761336
Target:  5'- cACGUCgacgCGGCcacuccagcggGACgucCGACCGGCACu -3'
miRNA:   3'- -UGCGGaa--GCUG-----------CUGau-GUUGGCCGUG- -5'
16495 5' -54.5 NC_004084.1 + 3524 0.66 0.761336
Target:  5'- cGCGUCUgggacuucugguUCGGCGACgACucgAACUGGCAg -3'
miRNA:   3'- -UGCGGA------------AGCUGCUGaUG---UUGGCCGUg -5'
16495 5' -54.5 NC_004084.1 + 38215 0.66 0.748946
Target:  5'- cGCGCUgucguucgaugCGGCGACUGCGGaacaguuuucUCGGCAa -3'
miRNA:   3'- -UGCGGaa---------GCUGCUGAUGUU----------GGCCGUg -5'
16495 5' -54.5 NC_004084.1 + 58176 0.66 0.740589
Target:  5'- aGC-CCUUCGcCGGCUGCGugcaucgcucGCCGGUcgACu -3'
miRNA:   3'- -UGcGGAAGCuGCUGAUGU----------UGGCCG--UG- -5'
16495 5' -54.5 NC_004084.1 + 34575 0.66 0.740589
Target:  5'- gGCGCUggCGGCGACUGCcuCCauCGCg -3'
miRNA:   3'- -UGCGGaaGCUGCUGAUGuuGGccGUG- -5'
16495 5' -54.5 NC_004084.1 + 13132 0.66 0.740589
Target:  5'- gACGaagaCUUCGACGGCgacgauucggACGACCGaacGUACa -3'
miRNA:   3'- -UGCg---GAAGCUGCUGa---------UGUUGGC---CGUG- -5'
16495 5' -54.5 NC_004084.1 + 52932 0.66 0.740589
Target:  5'- uACGCCgagCG-CGuC-ACGACCGGCGg -3'
miRNA:   3'- -UGCGGaa-GCuGCuGaUGUUGGCCGUg -5'
16495 5' -54.5 NC_004084.1 + 51588 0.66 0.739539
Target:  5'- cCGUCUUCGAgGACgaacuCAACgauaugacgucgaCGGCGCg -3'
miRNA:   3'- uGCGGAAGCUgCUGau---GUUG-------------GCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.