miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16496 5' -56.5 NC_004084.1 + 53413 0.66 0.697346
Target:  5'- --cUCCUCGAggaccuCGUCGAgauGCCCGAguggguCCCCg -3'
miRNA:   3'- ucaAGGAGCU------GCGGUU---CGGGUU------GGGG- -5'
16496 5' -56.5 NC_004084.1 + 46195 0.66 0.697346
Target:  5'- --cUCCUCGACgagcugGCCGAGUacuAUCCCg -3'
miRNA:   3'- ucaAGGAGCUG------CGGUUCGgguUGGGG- -5'
16496 5' -56.5 NC_004084.1 + 37287 0.66 0.697346
Target:  5'- cAGgacgUCCUCuggGAgGCCAcGUUCGACCUCa -3'
miRNA:   3'- -UCa---AGGAG---CUgCGGUuCGGGUUGGGG- -5'
16496 5' -56.5 NC_004084.1 + 21170 0.66 0.697346
Target:  5'- --gUCCUCGacgaGCGCCGGGaCgCGguucuucucGCCCCg -3'
miRNA:   3'- ucaAGGAGC----UGCGGUUC-GgGU---------UGGGG- -5'
16496 5' -56.5 NC_004084.1 + 51574 0.66 0.697346
Target:  5'- cGGUUCg-UGGCGUUGAGCguCCGGCCCUc -3'
miRNA:   3'- -UCAAGgaGCUGCGGUUCG--GGUUGGGG- -5'
16496 5' -56.5 NC_004084.1 + 48029 0.66 0.697346
Target:  5'- gAGUUCUUCGcgcucgauCGCCu-GCUCGACUCUc -3'
miRNA:   3'- -UCAAGGAGCu-------GCGGuuCGGGUUGGGG- -5'
16496 5' -56.5 NC_004084.1 + 6371 0.66 0.686651
Target:  5'- uAGUccaUCC-CGACGCCGuagaccgcucGCUCAGCCUg -3'
miRNA:   3'- -UCA---AGGaGCUGCGGUu---------CGGGUUGGGg -5'
16496 5' -56.5 NC_004084.1 + 6157 0.66 0.686651
Target:  5'- gGGUUCCU-GGCGaUCGGGCuCCAgguggACCUCg -3'
miRNA:   3'- -UCAAGGAgCUGC-GGUUCG-GGU-----UGGGG- -5'
16496 5' -56.5 NC_004084.1 + 56684 0.66 0.675906
Target:  5'- gAGUUCgUCaucuACGCCAcGCUCGACUCg -3'
miRNA:   3'- -UCAAGgAGc---UGCGGUuCGGGUUGGGg -5'
16496 5' -56.5 NC_004084.1 + 7196 0.66 0.66512
Target:  5'- gAGcUgCUCGACGCaccacGCCCAguaGCCCg -3'
miRNA:   3'- -UCaAgGAGCUGCGguu--CGGGU---UGGGg -5'
16496 5' -56.5 NC_004084.1 + 12515 0.66 0.664039
Target:  5'- --cUCCUCGgagaaguACGCUAAGCaggacucgaCCGGCCCg -3'
miRNA:   3'- ucaAGGAGC-------UGCGGUUCG---------GGUUGGGg -5'
16496 5' -56.5 NC_004084.1 + 39402 0.66 0.654304
Target:  5'- --aUCCcCGAcaCGCCGGGaUCCcACCCCg -3'
miRNA:   3'- ucaAGGaGCU--GCGGUUC-GGGuUGGGG- -5'
16496 5' -56.5 NC_004084.1 + 23175 0.66 0.654304
Target:  5'- uGGUcgUCCcagagguggUCGACGUCGaucgcgaucgucGGCUCGAUCCCg -3'
miRNA:   3'- -UCA--AGG---------AGCUGCGGU------------UCGGGUUGGGG- -5'
16496 5' -56.5 NC_004084.1 + 20032 0.66 0.654304
Target:  5'- cGGUuggUCCUCGGuCGCCuucccgcGCUCGAUCCg -3'
miRNA:   3'- -UCA---AGGAGCU-GCGGuu-----CGGGUUGGGg -5'
16496 5' -56.5 NC_004084.1 + 41954 0.66 0.654304
Target:  5'- cAGggCCgCGacuGCGCuCGcGCCCAugCCCg -3'
miRNA:   3'- -UCaaGGaGC---UGCG-GUuCGGGUugGGG- -5'
16496 5' -56.5 NC_004084.1 + 47658 0.66 0.643469
Target:  5'- gAGgUCggCGACGCCcccacuggcGAGCCgGAUCCCc -3'
miRNA:   3'- -UCaAGgaGCUGCGG---------UUCGGgUUGGGG- -5'
16496 5' -56.5 NC_004084.1 + 52701 0.66 0.642385
Target:  5'- gAGgaCCUCGGC-CCGAGCgacguccucgaacUCAACCCa -3'
miRNA:   3'- -UCaaGGAGCUGcGGUUCG-------------GGUUGGGg -5'
16496 5' -56.5 NC_004084.1 + 57646 0.67 0.632623
Target:  5'- cGUcgCCUCGACgaGCCGaucggccugguGGUCCAGCgCCu -3'
miRNA:   3'- uCAa-GGAGCUG--CGGU-----------UCGGGUUGgGG- -5'
16496 5' -56.5 NC_004084.1 + 11852 0.67 0.632623
Target:  5'- ---gCCgcgaugcCGAUGCCGAGUCCGACCa- -3'
miRNA:   3'- ucaaGGa------GCUGCGGUUCGGGUUGGgg -5'
16496 5' -56.5 NC_004084.1 + 57378 0.67 0.61094
Target:  5'- ---aCCUCGGCGaacuCGAGCgCGcCCCCg -3'
miRNA:   3'- ucaaGGAGCUGCg---GUUCGgGUuGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.