miRNA display CGI


Results 1 - 20 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16497 5' -56.9 NC_004084.1 + 58054 0.67 0.613551
Target:  5'- cGgGCUCGCGGcacaguUUCGAgAGGcCACCu- -3'
miRNA:   3'- -CgCGAGCGCU------AGGCUgUCCaGUGGug -5'
16497 5' -56.9 NC_004084.1 + 57475 0.67 0.613551
Target:  5'- -gGCcCGCGAccuccUCCGGgAGcGUCACCAg -3'
miRNA:   3'- cgCGaGCGCU-----AGGCUgUC-CAGUGGUg -5'
16497 5' -56.9 NC_004084.1 + 55197 0.68 0.518139
Target:  5'- gGCGCugaUCGUGG-CCGACAcGGUaCACCcGCa -3'
miRNA:   3'- -CGCG---AGCGCUaGGCUGU-CCA-GUGG-UG- -5'
16497 5' -56.9 NC_004084.1 + 54969 1.11 0.000602
Target:  5'- gGCGCUCGCGAUCCGACAGGUCACCACu -3'
miRNA:   3'- -CGCGAGCGCUAGGCUGUCCAGUGGUG- -5'
16497 5' -56.9 NC_004084.1 + 52866 0.72 0.318092
Target:  5'- cUGCUCgaGCGGUgCCGAgGGGUCGCCu- -3'
miRNA:   3'- cGCGAG--CGCUA-GGCUgUCCAGUGGug -5'
16497 5' -56.9 NC_004084.1 + 51336 0.67 0.592032
Target:  5'- uGCGCcCGCGAgaucuucgUCGACGGGUa--CACg -3'
miRNA:   3'- -CGCGaGCGCUa-------GGCUGUCCAgugGUG- -5'
16497 5' -56.9 NC_004084.1 + 47250 0.69 0.477562
Target:  5'- cGCGaUCGUGAUCgCGA--GGUCAUCACu -3'
miRNA:   3'- -CGCgAGCGCUAG-GCUguCCAGUGGUG- -5'
16497 5' -56.9 NC_004084.1 + 46605 0.73 0.267853
Target:  5'- -aGCUCGCGAUCCucuACcGGuuUCACCGCa -3'
miRNA:   3'- cgCGAGCGCUAGGc--UGuCC--AGUGGUG- -5'
16497 5' -56.9 NC_004084.1 + 46216 0.7 0.410631
Target:  5'- uGCG-UCGaCGAUCaucauCAGGUCGCCGCu -3'
miRNA:   3'- -CGCgAGC-GCUAGgcu--GUCCAGUGGUG- -5'
16497 5' -56.9 NC_004084.1 + 44968 0.68 0.507858
Target:  5'- -gGUcCGCGGUUCG-CAGGUCacGCCACc -3'
miRNA:   3'- cgCGaGCGCUAGGCuGUCCAG--UGGUG- -5'
16497 5' -56.9 NC_004084.1 + 43763 0.68 0.549447
Target:  5'- aCGCUCGCGGgcaUCGACuGGgcgcUCGCCGg -3'
miRNA:   3'- cGCGAGCGCUa--GGCUGuCC----AGUGGUg -5'
16497 5' -56.9 NC_004084.1 + 41554 0.68 0.518139
Target:  5'- cGCGCUCgagaucccacuuGCGAUCauCGACGGGaUCucCCGCc -3'
miRNA:   3'- -CGCGAG------------CGCUAG--GCUGUCC-AGu-GGUG- -5'
16497 5' -56.9 NC_004084.1 + 41363 0.66 0.678182
Target:  5'- cCGCUUGCGA--CGuCA-GUCACCGCa -3'
miRNA:   3'- cGCGAGCGCUagGCuGUcCAGUGGUG- -5'
16497 5' -56.9 NC_004084.1 + 40560 0.66 0.6567
Target:  5'- -aGCaaaGCGAUCgaugcgggCGACgAGGUCACCAUc -3'
miRNA:   3'- cgCGag-CGCUAG--------GCUG-UCCAGUGGUG- -5'
16497 5' -56.9 NC_004084.1 + 36276 0.69 0.497665
Target:  5'- gGCGCUCGCGGUCa-----GUCAUCGCu -3'
miRNA:   3'- -CGCGAGCGCUAGgcugucCAGUGGUG- -5'
16497 5' -56.9 NC_004084.1 + 35396 0.66 0.6567
Target:  5'- -aGCUCcagaucaCGA-CCGACGGGUCAUCGu -3'
miRNA:   3'- cgCGAGc------GCUaGGCUGUCCAGUGGUg -5'
16497 5' -56.9 NC_004084.1 + 35128 0.67 0.570643
Target:  5'- cGCGCUCGC--UCgGgACuGGUCgGCCGCu -3'
miRNA:   3'- -CGCGAGCGcuAGgC-UGuCCAG-UGGUG- -5'
16497 5' -56.9 NC_004084.1 + 34947 0.69 0.487565
Target:  5'- gGCGUUCGUGcgCuagCGGCuGGUCGCgACg -3'
miRNA:   3'- -CGCGAGCGCuaG---GCUGuCCAGUGgUG- -5'
16497 5' -56.9 NC_004084.1 + 34800 0.66 0.667457
Target:  5'- cGCGUccaUUGCGGUCugCGACGuGcUCACCGCg -3'
miRNA:   3'- -CGCG---AGCGCUAG--GCUGUcC-AGUGGUG- -5'
16497 5' -56.9 NC_004084.1 + 33689 0.7 0.438616
Target:  5'- aCGCUCGCuGAUCCaAUAGG-CACCu- -3'
miRNA:   3'- cGCGAGCG-CUAGGcUGUCCaGUGGug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.